Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11p15
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80024-9|AAK18886.1|  300|Caenorhabditis elegans Serpentine rece...    33   0.27 
Z48334-6|CAA88313.1|  655|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF314467-1|AAG41979.1|  655|Caenorhabditis elegans APC6 protein.       28   5.8  

>U80024-9|AAK18886.1|  300|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 10 protein.
          Length = 300

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 436 SLERCVFDTWAPRRTINALLMACQALLFVKL 528
           ++++C FD WA R  + AL   C  LL +KL
Sbjct: 176 AVDKCFFDHWADRSIMYALNFLCSGLLSIKL 206


>Z48334-6|CAA88313.1|  655|Caenorhabditis elegans Hypothetical
           protein F10B5.6 protein.
          Length = 655

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 107 QLVTLYNMSNKQMWNKFRPKKNQVLTFH 190
           +L+  YN+    MW K+R  +N+ L  H
Sbjct: 241 RLMAKYNLVEPAMWEKYRKVRNEQLKLH 268


>AF314467-1|AAG41979.1|  655|Caenorhabditis elegans APC6 protein.
          Length = 655

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 107 QLVTLYNMSNKQMWNKFRPKKNQVLTFH 190
           +L+  YN+    MW K+R  +N+ L  H
Sbjct: 241 RLMAKYNLVEPAMWEKYRKVRNEQLKLH 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,071,849
Number of Sequences: 27780
Number of extensions: 330014
Number of successful extensions: 725
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)