Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11p14
         (743 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    33   0.002
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    31   0.013
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    23   2.6  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   3.4  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   4.5  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   6.0  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 33.1 bits (72), Expect = 0.002
 Identities = 15/43 (34%), Positives = 27/43 (62%)
 Frame = +3

Query: 90  DGFPLLKRLKCILLNNNRIVRIGENLEHYIPNLESVILTNNNI 218
           D   +L RL+ + L+NNR+  + +N  H++ +L+ V L +N I
Sbjct: 36  DAIKILNRLEELDLSNNRLRNVPDNSFHFLRSLKKVHLQDNTI 78



 Score = 27.1 bits (57), Expect = 0.16
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +3

Query: 6   KIPQIENLGATLDQFDTIDFSDNDIRKLDGFPLLKRLKCIL---LNNNRIVRIGENLEHY 176
           K+P      A+      +D S N I  L     L R KC+    L+ NR+ +I       
Sbjct: 357 KLPLTSLSLASAQTLSELDLSWNSISSLSHGGQLARFKCLSWLDLSYNRLGQIDAGTFKG 416

Query: 177 IPNLESVILTNNN 215
           IP L S+ L +N+
Sbjct: 417 IPRLASLNLGHNS 429


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 30.7 bits (66), Expect = 0.013
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = +3

Query: 453  KTFVPGGNMPDPKVTNLTPQEIHKIREAIKNASSLQEVERLTRMLQSGQIPGQKPLQPVT 632
            +  VPG +  +  V  L P   + IR   +N     E      ++ + ++PG  P     
Sbjct: 946  RVLVPG-DQTEAGVFTLRPATTYHIRIVAENEIGSSEPSETVTIITAEEVPGGPPTSIRV 1004

Query: 633  QTNGQH 650
            +TN QH
Sbjct: 1005 ETNDQH 1010


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -2

Query: 370 LIFLKS--NNLSSGILNATYAL*WFLLATGLCMSDNVRSFGNV 248
           LIFL +    L  GI+N+T  L + L+ T   M +N+ + G+V
Sbjct: 86  LIFLVNWYPRLIIGIMNSTLNLIFLLIQTRFEMINNIITRGDV 128


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 548 CILDCFSDLMDFLRCKICNFRIRHISTRYKCL 453
           C++D +    +FL   + N  IR   +RYK L
Sbjct: 175 CLMDVY---YEFLLISLINILIRSFKSRYKDL 203


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = +2

Query: 569 TSDKNVAVWSDSRAKTFTARDTNKW 643
           T+  N ++WS +   +FT      W
Sbjct: 211 TNSANSSIWSPASIDSFTLEQHRSW 235


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 566 RTSDKNVAVWSDSRAKTFTARD 631
           RT+D  + +WSD + K+  A D
Sbjct: 403 RTTDTFLDLWSDYQNKSLAAFD 424


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,940
Number of Sequences: 336
Number of extensions: 4176
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)