Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11p14
(743 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo... 173 3e-44
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 47 2e-06
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 46 8e-06
SPAC5H10.03 |||phosphoglycerate mutase family|Schizosaccharomyce... 33 0.057
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 29 0.70
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 29 0.70
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 28 1.2
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ... 28 1.6
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 27 2.1
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 27 3.7
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 26 4.9
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 4.9
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 26 6.5
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 8.6
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 8.6
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c... 25 8.6
>SPBC1861.08c |||U2 snRNP-associated protein Lea1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 173 bits (420), Expect = 3e-44
Identities = 92/211 (43%), Positives = 130/211 (61%), Gaps = 10/211 (4%)
Frame = +3
Query: 3 YKIPQIENLGATLDQFDTIDFSDNDIRKLDGFPLLKRLKCILLNNNRIVRIGENLEHYIP 182
Y+IP IENLG D D IDF+DNDIR L FP +KRL+ +L NNRI I ++ +P
Sbjct: 28 YQIPIIENLGVLRDVHDAIDFTDNDIRYLGNFPRMKRLQTLLCGNNRITAIAPDIGKVLP 87
Query: 183 NLESVILTNNNISELGDLDPLSTLPKLRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFR 362
NL+++ L N++ E+ DLDPL++ P+L LS + NPVA K +YR Y+ +++P L +LDF
Sbjct: 88 NLKTLSLAQNHLQEIADLDPLASCPQLTNLSCIDNPVAQKQYYRLYLIWRIPSLHILDFE 147
Query: 363 KIKQKERDEANTLF-KSRKGKEIQREI-AKKAKTF--------VPGGNMPDPKVTNLTPQ 512
++++ ER A +F + + EI I K++ F P N P LTP+
Sbjct: 148 RVRRNERLRAEEVFGQIQNPTEIASSIMGVKSRVFDLAALVQSHPEANSPITTGYTLTPE 207
Query: 513 EIHKIREAIKNASSLQEVERLTRMLQSGQIP 605
E KI+EAIKNASS+ E+ RL ML G+IP
Sbjct: 208 EREKIKEAIKNASSIAEINRLEAMLLEGKIP 238
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 47.2 bits (107), Expect = 2e-06
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Frame = +3
Query: 6 KIPQIENLGATLDQFDTIDFSDNDIRKLDGFPLLKRLKCILLNNNRIVRIGENLEHYIPN 185
+I Q ENL + S N + G +L+ L+ + ++NN I + + + N
Sbjct: 203 RITQFENLACLSHCLRELYVSHNGLTSFSGIEVLENLEILDVSNNMIKHL--SYLAGLKN 260
Query: 186 LESVILTNNNISELGDL-DPLSTLPKLRTLSLMHNPVANKNH--YRAYVAFKMPELRLLD 356
L + +NN +S ++ D LS L KL T+ NP+ N YR V +P+LR +D
Sbjct: 261 LVELWASNNELSSFQEIEDELSGLKKLETVYFEGNPLQKTNPAVYRNKVRLCLPQLRQID 320
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 45.6 bits (103), Expect = 8e-06
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Frame = +3
Query: 132 NNNRIVRIGENLEHYIPNLESVILTNNNISELGDLDPLS---TLPKLRTLSLMHNPV--- 293
NN + V L P L ++ L NN I+ L DLDP S LP+L+ L L+ NP+
Sbjct: 224 NNLQSVTAVTTLAQTWPKLLNLSLANNRITSLSDLDPWSPKTKLPELQELVLVGNPIVTT 283
Query: 294 -ANK-NHYRAYVAFKMPELRLLDFRKIKQK 377
AN+ Y+ + + P+LRLLD I +
Sbjct: 284 FANRAMDYQREMVSRFPKLRLLDGNSINSE 313
>SPAC5H10.03 |||phosphoglycerate mutase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 219
Score = 32.7 bits (71), Expect = 0.057
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 498 NLTPQEIHKIREAIKNASSLQEVERLTRMLQSGQIP 605
N+ P E H IR+ + + +++ E L + L+S QIP
Sbjct: 20 NVGPDEDHNIRDPVLTSEGIEQCEALAKELESKQIP 55
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 29.1 bits (62), Expect = 0.70
Identities = 19/89 (21%), Positives = 44/89 (49%)
Frame = +3
Query: 6 KIPQIENLGATLDQFDTIDFSDNDIRKLDGFPLLKRLKCILLNNNRIVRIGENLEHYIPN 185
+I ++ + L + + + +N+I +++ L+ L + L+NN++ + + +
Sbjct: 723 RIKELSFTNSNLHRLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLTNL--KASQPMIH 780
Query: 186 LESVILTNNNISELGDLDPLSTLPKLRTL 272
L + ++NN I +L + P LRTL
Sbjct: 781 LRILRISNNAIHQL----EVDQFPHLRTL 805
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 29.1 bits (62), Expect = 0.70
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 132 NNNRIVRIGENLEHYIPNLE-SVILTNNNISELGDLDPLSTLPKLRTLSLMHNPVANKNH 308
NN + I E +I N S T++N+S G L P T R L+ + NP N++H
Sbjct: 511 NNLPSLAISPVSEGFIQNATISTPSTSSNLSIAGSLTPSKTSRIYRGLAPLKNPEFNEDH 570
Query: 309 YR 314
+
Sbjct: 571 VK 572
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/87 (20%), Positives = 42/87 (48%)
Frame = +3
Query: 420 KEIQREIAKKAKTFVPGGNMPDPKVTNLTPQEIHKIREAIKNASSLQEVERLTRMLQSGQ 599
KEIQ+E+ F+ + VT+ + + +REA++ S ++ L+ +L+ +
Sbjct: 1005 KEIQKELEVYNNHFMKQAELMTSNVTDESQLMLKTLREALQ--SKTNNIDHLSTILERNR 1062
Query: 600 IPGQKPLQPVTQTNGQHEDEEMDTDQA 680
+ L Q ++++ + +T Q+
Sbjct: 1063 KEYKSLLDDYNQLRARYKNLQSNTPQS 1089
>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 485
Score = 27.9 bits (59), Expect = 1.6
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +3
Query: 3 YKIPQIENLGATLDQFDT-IDFSDNDIRKLDGFPLLKRLKCILLNNNRIVRIGENLEHYI 179
+K+P I + G+ T ++ +D D R + LL + + + E
Sbjct: 241 HKLPVIASTGSACKSDPTRVNIADISATSEDPLSRATRRRLRLLGIMEGIPVVFSTEKPD 300
Query: 180 PNLESVILTNNNISELGDLDPLSTLPKLR 266
P S++ + E GD+D LS LP+ R
Sbjct: 301 PRKASLLPLSEEEFEKGDVDELSALPEFR 329
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +3
Query: 42 DQFDTIDFSDNDIRK--LDGFPLLKRLKCILLNNNRIVRIGE 161
DQ I +S ++ + ++GFPL+KR LN +I++I E
Sbjct: 4 DQIHKITYSGVEVFEYTINGFPLMKRCHDNWLNATQILKIAE 45
>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/74 (22%), Positives = 33/74 (44%)
Frame = +3
Query: 270 LSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIKQKERDEANTLFKSRKGKEIQREIAKK 449
+S+ + +N YR + P RL I + + D + T+F+ + + I +
Sbjct: 1 MSISIETITKRNQYRVDQPQRQPS-RLSTVASISEYQSDYSKTVFEEIELEVIPNKQNIS 59
Query: 450 AKTFVPGGNMPDPK 491
++F GN DP+
Sbjct: 60 TRSFRNDGNDSDPQ 73
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 536 NQECIIPTGGRTSDKNVAVWSDSRAKTFTARDT 634
+Q I+ +GG T+D+ + +W+ R DT
Sbjct: 427 HQRGILASGGGTADRTIKLWNTQRGSMLHNIDT 459
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 4.9
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = +3
Query: 510 QEIHKIREAIKNASSLQEVERLTRMLQSGQIPGQKPLQPVTQTNGQHEDEEMDTDQANGQ 689
QE++ +RE IK + E + + I +K V ++ E+ T+ +N +
Sbjct: 490 QELNNLREQIKEQKKVSESTQSSLQSLQRDILNEKKKHEVYESQLNELKGELQTEISNSE 549
Query: 690 *LSQQ 704
LS Q
Sbjct: 550 HLSSQ 554
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -3
Query: 186 NLVYNVPNSLLSSRSCYYSIEYISTFLAVENRQAF 82
+L YN+P+ L+ SC I+ I+ L +++ Q+F
Sbjct: 744 HLGYNIPSQLMELASCLQRIQLIAMCL-IDSVQSF 777
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 8.6
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Frame = +3
Query: 255 PKLRTLSLMHNPVANKNHYRAYVAFKMPELRLLDFRKIK--QKERDEANTLFKSRKGKEI 428
PKLR + R Y P++ +D IK ++ER + K + +
Sbjct: 321 PKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKAQEEERKRQAEIEKEIRQSRL 380
Query: 429 QREIAKKAK 455
Q E KK K
Sbjct: 381 QEEERKKKK 389
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 172 CSKFSPILTILLLFNRIHFNLFSSGKPSSFLMSLSEKSIVSN 47
C F P L L F +HFN+ + P MSL + +S+
Sbjct: 289 CLIFFPFLFFLFWFY-MHFNILTISGPGDSFMSLEFQETLSD 329
>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 525 IREAIKNASSLQEVERLTRML 587
IRE I +SLQEVE +T+ L
Sbjct: 139 IRERIDQVASLQEVESVTQAL 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,081,775
Number of Sequences: 5004
Number of extensions: 66520
Number of successful extensions: 228
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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