Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11p14
         (743 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              23   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.0  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    23   4.0  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    23   4.0  

>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 317 ICGIQNARAKIIGLQED 367
           +CG+QN RA+ + + +D
Sbjct: 14  MCGVQNLRARSVNIFQD 30


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +3

Query: 54  TIDFSDNDIRKLDGFPLLKRLKCILLNNNRIVRIGENLEHYIPNLESVILTNNNISEL 227
           T+D S N I +L    +   ++ + +NNN I  +  N      NL  V +  N I  +
Sbjct: 599 TLDASHNRITELSPLSVPDSVELLFINNNYINLVRPNTFTDKVNLTRVDMYANMIETM 656



 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/49 (22%), Positives = 25/49 (51%)
 Frame = +3

Query: 90  DGFPLLKRLKCILLNNNRIVRIGENLEHYIPNLESVILTNNNISELGDL 236
           D F  L+ L  + +  + +  +  N    + NL+++ LT N + ++ D+
Sbjct: 141 DSFLGLRELHTLEIVESNVQALPVNSLCSLDNLQTLNLTENRLRDINDI 189


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 165 LEHYIPNLESVILT 206
           LE YIP +ESV+ T
Sbjct: 101 LEEYIPRVESVVET 114


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 165 LEHYIPNLESVILT 206
           LE YIP +ESV+ T
Sbjct: 75  LEEYIPRVESVVET 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,305
Number of Sequences: 438
Number of extensions: 4705
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)