Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11p12
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0340 + 42851330-42851413,42852179-42852245,42852336-42852592 89 2e-18
08_02_0958 - 23044708-23046045,23046131-23046363,23047059-230471... 88 6e-18
08_02_0956 + 23026108-23027146,23027255-23027395,23029334-230295... 88 6e-18
05_01_0065 + 461182-461271,462222-462288,462408-462664 88 7e-18
02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344... 85 7e-17
12_01_0743 + 6676906-6677007,6677160-6677226,6678246-6678529 84 1e-16
02_05_0137 - 26181793-26182055,26182172-26182238,26182392-26182478 84 1e-16
09_02_0530 + 10285844-10287217 63 2e-10
07_01_0887 + 7380332-7380370,7381286-7381640,7382752-7382886,738... 60 2e-09
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801... 34 0.096
01_06_0295 + 28276505-28276576,28276682-28276888,28277492-282777... 30 2.1
01_07_0009 - 40397276-40397534,40397637-40398745,40398834-403989... 29 4.8
05_05_0252 - 23621592-23621912,23621958-23622317,23622979-236230... 28 6.3
03_06_0579 + 34870958-34874578 28 6.3
>01_07_0340 + 42851330-42851413,42852179-42852245,42852336-42852592
Length = 135
Score = 89.4 bits (212), Expect = 2e-18
Identities = 40/76 (52%), Positives = 51/76 (67%)
Frame = +1
Query: 208 SKNLTLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGH 387
+K LTL+EV KH + W+II VY+VTKFLE+HPGG D LL KD T FEDVGH
Sbjct: 4 NKVLTLEEVSKHNTKDDCWLIIGGKVYNVTKFLEDHPGGDDVLLSSTAKDATDDFEDVGH 63
Query: 388 SDDARELLKKYKIGTL 435
S AR ++ +Y +G +
Sbjct: 64 STTARAMMDEYYVGDI 79
>08_02_0958 -
23044708-23046045,23046131-23046363,23047059-23047199,
23047296-23048334
Length = 916
Score = 88.2 bits (209), Expect = 6e-18
Identities = 39/75 (52%), Positives = 52/75 (69%)
Frame = +1
Query: 211 KNLTLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHS 390
K T+ EV+KH + S WI++H VYD T FL++HPGGADS+L AG D T+ F+ + HS
Sbjct: 542 KQFTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAI-HS 600
Query: 391 DDARELLKKYKIGTL 435
D A+ LL Y+IG L
Sbjct: 601 DKAKALLDTYRIGEL 615
>08_02_0956 +
23026108-23027146,23027255-23027395,23029334-23029566,
23029652-23030989
Length = 916
Score = 88.2 bits (209), Expect = 6e-18
Identities = 39/75 (52%), Positives = 52/75 (69%)
Frame = +1
Query: 211 KNLTLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHS 390
K T+ EV+KH + S WI++H VYD T FL++HPGGADS+L AG D T+ F+ + HS
Sbjct: 542 KQFTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAI-HS 600
Query: 391 DDARELLKKYKIGTL 435
D A+ LL Y+IG L
Sbjct: 601 DKAKALLDTYRIGEL 615
>05_01_0065 + 461182-461271,462222-462288,462408-462664
Length = 137
Score = 87.8 bits (208), Expect = 7e-18
Identities = 39/75 (52%), Positives = 50/75 (66%)
Frame = +1
Query: 211 KNLTLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHS 390
K TL+EV KH + W+II VY+V+KFLE+HPGG D LL GKD T FEDVGHS
Sbjct: 7 KVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGHS 66
Query: 391 DDARELLKKYKIGTL 435
AR ++ +Y +G +
Sbjct: 67 TTARAMMDEYYVGDI 81
>02_05_0889 -
32532495-32533832,32533919-32534151,32534321-32534461,
32534564-32535521
Length = 889
Score = 84.6 bits (200), Expect = 7e-17
Identities = 38/72 (52%), Positives = 52/72 (72%)
Frame = +1
Query: 220 TLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHSDDA 399
T+ EV++H +S WII+H VYD T FL++HPGGADS++ AG D T+ F+ + HSD A
Sbjct: 517 TMSEVRRHTTPESAWIIVHGHVYDCTGFLKDHPGGADSIMINAGTDCTEEFDAI-HSDKA 575
Query: 400 RELLKKYKIGTL 435
R LL+ Y+IG L
Sbjct: 576 RGLLEMYRIGEL 587
>12_01_0743 + 6676906-6677007,6677160-6677226,6678246-6678529
Length = 150
Score = 83.8 bits (198), Expect = 1e-16
Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Frame = +1
Query: 211 KNLTLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEV-AGKDGTQAFEDVGH 387
K + +V H K W++IH VYDVTKFLE+HPGG D LL A D T+AFEDVGH
Sbjct: 11 KLFSASDVVGHASRKDCWVVIHGKVYDVTKFLEDHPGGEDVLLHASASGDATEAFEDVGH 70
Query: 388 SDDARELLKKYKIGTL 435
S A ++ Y IG++
Sbjct: 71 STSAISMMNNYLIGSI 86
>02_05_0137 - 26181793-26182055,26182172-26182238,26182392-26182478
Length = 138
Score = 83.8 bits (198), Expect = 1e-16
Identities = 36/70 (51%), Positives = 46/70 (65%)
Frame = +1
Query: 220 TLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHSDDA 399
+ EV KH D K W+II VYDV+ F+EEHPGG + LL GKD T F D+GH+ A
Sbjct: 9 SFQEVSKHNDRKDCWLIIAGKVYDVSPFMEEHPGGDEVLLACTGKDATADFNDIGHTATA 68
Query: 400 RELLKKYKIG 429
+EL+ +Y IG
Sbjct: 69 KELMPQYCIG 78
>09_02_0530 + 10285844-10287217
Length = 457
Score = 62.9 bits (146), Expect = 2e-10
Identities = 30/73 (41%), Positives = 43/73 (58%)
Frame = +1
Query: 217 LTLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHSDD 396
++ +E++ H +WI I DVYDVT ++ HPGG LL +AG+D T AF H
Sbjct: 19 ISSEELRAHASRDDLWISISGDVYDVTAWVPHHPGGDIPLLTLAGQDATDAFA-AYHPPS 77
Query: 397 ARELLKKYKIGTL 435
AR LL ++ +G L
Sbjct: 78 ARPLLGRFLVGRL 90
>07_01_0887 +
7380332-7380370,7381286-7381640,7382752-7382886,
7383029-7383138
Length = 212
Score = 59.7 bits (138), Expect = 2e-09
Identities = 22/52 (42%), Positives = 36/52 (69%)
Frame = +1
Query: 217 LTLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAF 372
++L+EVK+HK S+W ++ VY++ +++ HPGG D L++ AGKD T F
Sbjct: 142 ISLEEVKQHKTGDSIWTVLKGRVYNIAPYMKFHPGGVDMLMKAAGKDSTALF 193
>09_02_0511 -
10079180-10079355,10079656-10079722,10080144-10080181,
10080255-10080336
Length = 120
Score = 34.3 bits (75), Expect = 0.096
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +1
Query: 283 VYDVTKFLEEHPGGADSLLEVAG 351
VYDVT ++EEHPGG D +L AG
Sbjct: 41 VYDVTSYVEEHPGG-DEILNNAG 62
>01_06_0295 +
28276505-28276576,28276682-28276888,28277492-28277740,
28277928-28278080,28278158-28278313,28278411-28278570,
28278664-28278815,28278906-28278993,28279111-28279223,
28279271-28279345,28279435-28279669,28279760-28280148
Length = 682
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +1
Query: 295 TKFLEEHP-GGADSLLEVAGKDGTQAFEDVGHSDDARELLKKYKIGTLPPGER 450
TK H GGA+ L + G D+ HS R K +IGTL P R
Sbjct: 504 TKKAPRHSMGGANRRLSLGGATMQPPKTDILHSKSVRAAKKTEEIGTLSPSSR 556
>01_07_0009 -
40397276-40397534,40397637-40398745,40398834-40398932,
40399043-40399272,40399534-40399585,40399679-40399865,
40399987-40400193,40400283-40400449,40400804-40401094,
40401166-40401636
Length = 1023
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 549 LVEIFLEDDPYEQGSSQRHHCPFQFRTICDDFAS 448
L+ L+ E G + PF RT+CDD S
Sbjct: 490 LINEVLDQAKIESGKLELETVPFDLRTVCDDILS 523
>05_05_0252 -
23621592-23621912,23621958-23622317,23622979-23623059,
23623262-23623633
Length = 377
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 340 EVAGKDGTQAFEDVGHSDDARELLKKYKIGTLPP 441
EVAG QA H E +KK +G+ PP
Sbjct: 165 EVAGAPVQQAASPTSHPPQVDETMKKASVGSTPP 198
>03_06_0579 + 34870958-34874578
Length = 1206
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Frame = +1
Query: 289 DVTKFLEEHPG------GADSLLEV-AGKDGTQAFEDVGHSDDARE 405
D T F++ G GA LLEV A D D GH+DDA E
Sbjct: 328 DATNFVDSSTGYVATGDGASELLEVPANVDDLHFVTDDGHNDDAEE 373
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,869,999
Number of Sequences: 37544
Number of extensions: 338273
Number of successful extensions: 997
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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