Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11p12
(706 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3835| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23) 103 1e-22
SB_34578| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23) 103 1e-22
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34) 64 8e-11
SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19) 62 6e-10
SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20) 61 7e-10
SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12) 58 9e-09
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0) 55 5e-08
SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 8e-07
SB_23567| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00019) 31 0.91
SB_34637| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_58498| Best HMM Match : Mtc (HMM E-Value=3.00004e-41) 28 6.4
SB_40332| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_42304| Best HMM Match : NHL (HMM E-Value=0) 28 6.4
>SB_3835| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)
Length = 109
Score = 103 bits (248), Expect = 1e-22
Identities = 46/80 (57%), Positives = 57/80 (71%)
Frame = +1
Query: 211 KNLTLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHS 390
K T DEVK H W++IHN V+DVTKFL+EHPGG + LLE AG D +++FEDVGHS
Sbjct: 8 KLYTFDEVKNHNKAGGCWLVIHNKVFDVTKFLDEHPGGEEVLLEQAGGDASESFEDVGHS 67
Query: 391 DDARELLKKYKIGTLPPGER 450
DAREL+ +Y IG L +R
Sbjct: 68 SDARELMNEYCIGELREADR 87
>SB_34578| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)
Length = 172
Score = 103 bits (248), Expect = 1e-22
Identities = 46/80 (57%), Positives = 57/80 (71%)
Frame = +1
Query: 211 KNLTLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHS 390
K T DEVK H W++IHN V+DVTKFL+EHPGG + LLE AG D +++FEDVGHS
Sbjct: 8 KLYTFDEVKNHNKAGGCWLVIHNKVFDVTKFLDEHPGGEEVLLEQAGGDASESFEDVGHS 67
Query: 391 DDARELLKKYKIGTLPPGER 450
DAREL+ +Y IG L +R
Sbjct: 68 SDARELMNEYCIGELREADR 87
>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
Length = 1790
Score = 64.5 bits (150), Expect = 8e-11
Identities = 26/69 (37%), Positives = 44/69 (63%)
Frame = +1
Query: 226 DEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHSDDARE 405
++++ H E +W++IH VYD+ +F EE P G L + A D T+AFE+ HS +AR
Sbjct: 1234 EDLENHNKEGGMWVVIHGKVYDLKEFKEEAPCGESLLQKYAACDATKAFEEANHSYEARM 1293
Query: 406 LLKKYKIGT 432
+++ + +GT
Sbjct: 1294 MMQDHLVGT 1302
>SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19)
Length = 167
Score = 61.7 bits (143), Expect = 6e-10
Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Frame = +1
Query: 226 DEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAF---EDVGHSDD 396
+E+ +HK + +W+I VYD++KF E HPGG D LL +G+D T E HS
Sbjct: 13 EEIGRHKSDGDLWVIHSGKVYDISKFSERHPGGKDVLLLNSGQDVTSIMSNGEIHKHSQI 72
Query: 397 ARELLKKYKIGTLPPGERC 453
A LKKY IG L C
Sbjct: 73 AYGWLKKYNIGRLQAELSC 91
>SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20)
Length = 142
Score = 61.3 bits (142), Expect = 7e-10
Identities = 31/93 (33%), Positives = 52/93 (55%)
Frame = +1
Query: 199 RKMSKNLTLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFED 378
R+ K TLDEVK+H + W+++ + VYD++K++ HPGG +L +AG++ T F+
Sbjct: 7 RRTPKVYTLDEVKEHCSKGDCWVVVEDSVYDLSKWIGHHPGGELPILYMAGRECTDVFKA 66
Query: 379 VGHSDDARELLKKYKIGTLPPGERCKIITDCSK 477
+ + L +KIG L + K T S+
Sbjct: 67 FHPAWVFTKKLPAFKIGKLDDTRKEKKETSLSE 99
>SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12)
Length = 303
Score = 57.6 bits (133), Expect = 9e-09
Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Frame = +1
Query: 208 SKNLTLDEVKKHKDEK-SVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGK--DGTQAFED 378
S+ +L EV KH D + VW + VYD+T F+E+HPGG ++ AG D D
Sbjct: 155 SRTFSLSEVAKHTDARHGVWTTYEDGVYDLTDFIEQHPGGKKMIMLAAGSRLDPYWNIHD 214
Query: 379 VGHSDDARELLKKYKIGTL 435
DD ++L +++IG+L
Sbjct: 215 FHKRDDIVKILSEFRIGSL 233
>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
Length = 672
Score = 55.2 bits (127), Expect = 5e-08
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Frame = +1
Query: 208 SKNLTLDEVKKHKDEKS-VWIIIHNDVYDVTKFLEEHPGGADSLLEVAGK--DGTQAFED 378
+K + +EV KH + KS +W+ VYD+T F++ HPGG ++ AG + A
Sbjct: 201 AKIYSKEEVSKHNNRKSRIWVTYKGGVYDITDFIDGHPGGTSKIILAAGAALEPYWAMYA 260
Query: 379 VGHSDDARELLKKYKIGTL 435
V ++ E+L++Y+IG L
Sbjct: 261 VHKKEEVLEILEEYRIGDL 279
>SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 319
Score = 51.2 bits (117), Expect = 8e-07
Identities = 24/56 (42%), Positives = 33/56 (58%)
Frame = +1
Query: 208 SKNLTLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFE 375
+K T ++ + E++ + IH VYDVT FL HPGG + LL AG+D T FE
Sbjct: 22 TKTFTWQQLSRLNTEQNAHLAIHGKVYDVTNFLLRHPGGKELLLIGAGRDVTLVFE 77
>SB_23567| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00019)
Length = 653
Score = 31.1 bits (67), Expect = 0.91
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +3
Query: 474 EIEMGSGGAGWSLAHRDRPQEISQLIKL*AEHILRESDR 590
E ++G+G +G SLA P+++ ++ AEH RE+ R
Sbjct: 576 ETDLGTGNSGPSLAVLSNPRDLDVSLEFIAEHSRREAQR 614
>SB_34637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 355 DGTQAFEDVGHSDDARELLKKYKIGTLPPGER 450
D T+AFE+ HS +AR +++ + +GT E+
Sbjct: 3 DATKAFEEANHSYEARMMMQDHLVGTFVEPEQ 34
>SB_58498| Best HMM Match : Mtc (HMM E-Value=3.00004e-41)
Length = 217
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 355 DGTQAFEDVGHSDDARELLKKYKIGTLPPG 444
D T++F DDA++L++KY+ G P G
Sbjct: 29 DWTKSFHTNKELDDAKDLVEKYRRGEEPAG 58
>SB_40332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 477
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 355 DGTQAFEDVGHSDDARELLKKYKIGTLPPG 444
D T++F DDA++L++KY+ G P G
Sbjct: 289 DWTKSFHTNKELDDAKDLVEKYRRGEEPAG 318
>SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1683
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +2
Query: 305 WRSIQV-ELIHC*KWQGRMEPRLLKTWDIVMMLESC*RNTKLERCLQVKDAKSSQIVRN* 481
WR V L+ KW G EP LLK + M E+ + +E C + S RN
Sbjct: 90 WRREYVPHLVQRSKWLGPSEPDLLKNIGVARMPET---RSNVENCRAKRKVVRSNCTRNI 146
Query: 482 N 484
N
Sbjct: 147 N 147
>SB_42304| Best HMM Match : NHL (HMM E-Value=0)
Length = 1279
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Frame = -3
Query: 455 LHLSPGGNVPILYFFNNSRAS-----SLCPTSSKAWVPSFPATSNNESAPPGCSSK 303
L L+P GN+ I F NN S S+ P + + + PA N P G K
Sbjct: 345 LALTPDGNICIADFRNNRYRSNETKLSIVPRAGRKLLQKLPANRNKSYPPTGLKCK 400
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,457,510
Number of Sequences: 59808
Number of extensions: 384466
Number of successful extensions: 974
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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