Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11p07
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    40   4e-04
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    38   0.002
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    33   0.026
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    33   0.026
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    31   0.14 
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    29   0.43 
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    29   0.75 
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    26   5.3  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    25   7.0  
SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr 2||...    25   9.3  

>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 39.5 bits (88), Expect = 4e-04
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +1

Query: 313 CPDCNKKFVHESTLKAH--SFVHEPIPYVCHCGVAYYKSCDLKDHKKL 450
           CP+C+KKF     L+ H  S      P+VC CG  + +  +L+ H++L
Sbjct: 425 CPECSKKFKRSEHLRRHIRSLHTSEKPFVCICGKRFSRRDNLRQHERL 472


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = +1

Query: 301 KVHQCP--DCNKKFVHESTLKAHSFVHE-PIPYVCH---CGVAYYKSCDLKDHKK 447
           K+  CP  +C KK+   S L+ H   H    P+VC    C  A+Y+   LK HK+
Sbjct: 21  KIFHCPYEECGKKYSRPSLLEQHLRTHSNERPFVCDYTGCSKAFYRKSHLKIHKR 75



 Score = 29.9 bits (64), Expect = 0.33
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = +1

Query: 322 CNKKFVHESTLKAHSFVHEPI-PYVCH---CGVAYYKSCDLKDH 441
           C+K F  +S LK H   H  + P+ CH   C   +Y    L+ H
Sbjct: 60  CSKAFYRKSHLKIHKRCHTNVKPFSCHYDGCDAQFYTQQHLERH 103



 Score = 27.9 bits (59), Expect = 1.3
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
 Frame = +1

Query: 301 KVHQCP--DCNKKFVHESTLKAH-SFVHE-PIPYVC-HCGVAY-YK 420
           K + CP   C K F   S LK H S +HE  + + C  CG  + YK
Sbjct: 234 KTYHCPMEGCKKSFTRSSALKKHISVIHEGNMAFHCDSCGTKFGYK 279


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 33.5 bits (73), Expect = 0.026
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 307 HQCPDCNKKFVHESTLKAHSFVHE-PIPYVCHCGVAYYKSCDLKDHKK 447
           ++C  C   FV    LK H  +HE   PYVC C   + +   L  HK+
Sbjct: 473 YRCDLCKAGFVRHHDLKRHLRIHENGRPYVCECLKRFNRLDALNRHKQ 520


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 33.5 bits (73), Expect = 0.026
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
 Frame = +1

Query: 307 HQCPDCNKKFVHESTLKAHSFVHE-PIPYVCH---CGVAYYKSCDLKDHKKL 450
           ++C +C + F   S+LK H++ H    P+VC    CG A+    +++ H+++
Sbjct: 468 YRCTECLQGFSRPSSLKIHTYSHTGERPFVCDYAGCGKAFNVRSNMRRHQRI 519


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 316 PDCNKKFVHESTLKAHSFVHEPI-PYVC-HCGVAYYKSCDLKDHKKLVH 456
           PDC K F  +  L+ H   HE +  + C  C  A+ +S  L  H + +H
Sbjct: 31  PDCPKSFTRKEHLRRHERTHENVKAFSCSFCNRAFARSDVLNRHVQQMH 79


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 502 VKTKTSKPKMKSVQIKKLKNKKIRGRNSKPGSQKIKHNFDKKLNDN 639
           V    + PK K++    LK+ ++ G   K  S+K K+N +K  NDN
Sbjct: 603 VNANHNAPKKKNLN-DSLKSVELEGNGIKLSSEKGKNNVNKVRNDN 647


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 322 CNKKFVHESTLKAHSFVHEPI-PYVCH-CGVAYYKSCDLKDHKKL 450
           CNK+F     LK+H   H    P+ C  C  ++ +  D + H++L
Sbjct: 577 CNKRFTRAYNLKSHMNTHTNYRPFQCSICKKSFARQHDKRRHEQL 621


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 307 HQCPDCNKKFVHESTLKAHSFVHEPIPYVCHC 402
           + CP C   F  +  + AH  +HE   Y C C
Sbjct: 389 YACPSCKNHFCLDCDVFAHEQLHE--CYGCQC 418


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 301 KVHQCPDCNKKFVHESTLKAHSFVHEPIPYVCH-CG 405
           K + CP CNKKF   S+L   S V     + C+ CG
Sbjct: 134 KGYVCPFCNKKF---SSLDVLSLVTNEGTFACNVCG 166


>SPBP16F5.02 |mcs2||cyclin Mcs2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 301 KVHQCPDCNKKFVHESTLKAHSFVHEP 381
           K ++C D +KKF+ E+      F+H P
Sbjct: 190 KFYECHDLSKKFLIETLHSDIYFLHSP 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,718
Number of Sequences: 5004
Number of extensions: 43110
Number of successful extensions: 137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)