Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11p06
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces...    69   7e-13
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   6.5  
SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    25   8.7  
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa...    25   8.7  

>SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 113

 Score = 68.5 bits (160), Expect = 7e-13
 Identities = 36/104 (34%), Positives = 64/104 (61%)
 Frame = +2

Query: 248 LTVEVMFGGGAELLFNKVKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREEL 427
           + ++V   GG +LLFNK K   ++L  L         +  +L + +  + +     +++L
Sbjct: 1   MAIKVELLGGLDLLFNKQKALSLSLSNL------GSTKLGSLIDYMAQIIEK--PSQKDL 52

Query: 428 FLKDDSVRPGILVLINEEDWELHGQLNYELKENDKIMFISTLHG 559
           F+ + +VRPGI+VL+N++DWEL  +  Y L+E D+++F+STLHG
Sbjct: 53  FILNGTVRPGIIVLVNDQDWELLEKEEYNLEEGDEVVFVSTLHG 96


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
 Frame = +2

Query: 413 EREELFLKDDSVRPGILVLINEEDWELH-----GQLNYELKENDKIMFIS 547
           EREE+FL+DD  +     L++ +D  L        + +EL  +    FIS
Sbjct: 7   EREEVFLEDDQAQHSQAELLSSKDENLQPSIPLSPVAFELDFSGNFQFIS 56


>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 464 RVYQVGQNHPSRTTLLFPPA 405
           ++  VG+N+P+ +  LFPP+
Sbjct: 169 KLKDVGENYPNLSEFLFPPS 188


>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
 Frame = +2

Query: 299 VKRKEIALPPLKTFLPDSQNQNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILVLINE 478
           VKR E+ L  LK +    + + W   + L  L D L + +  +F         +   + E
Sbjct: 224 VKRDELTLEGLKQYFIAVEKEEWKF-DTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMRE 282

Query: 479 EDW---ELHGQLNYELKENDKIM 538
            ++    +HG++    KE D IM
Sbjct: 283 ANFTVTSMHGEM--PQKERDAIM 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,383,443
Number of Sequences: 5004
Number of extensions: 47239
Number of successful extensions: 133
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)