Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11p03
(319 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g59730.1 68416.m06664 receptor lectin kinase, putative simila... 31 0.22
At3g11380.1 68416.m01384 pentatricopeptide (PPR) repeat-containi... 27 3.6
At2g16960.1 68415.m01954 importin beta-2 subunit family protein ... 27 3.6
At1g71830.1 68414.m08301 leucine-rich repeat family protein / pr... 27 3.6
At4g13620.1 68417.m02120 AP2 domain-containing transcription fac... 26 4.8
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 26 6.3
At1g63810.1 68414.m07221 nucleolar RNA-associated family protein... 26 6.3
At1g34210.1 68414.m04245 somatic embryogenesis receptor-like kin... 26 6.3
At5g16000.1 68418.m01871 leucine-rich repeat family protein / pr... 25 8.3
At5g15360.1 68418.m01798 hypothetical protein 25 8.3
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 25 8.3
>At3g59730.1 68416.m06664 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains pfam domains PF00139:
Legume lectins beta domain and PF00069: Protein kinase
domain
Length = 523
Score = 30.7 bits (66), Expect = 0.22
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -2
Query: 225 LHY-VLLLSSPIRALSSVRWGNLPFLPPSKEKCSDRHNRHRA*CYSIS 85
LHY VL+ + P + +G +P LPP +K SDR A C +++
Sbjct: 239 LHYMVLVYTYPEAVYQPLEFGRVPTLPPYPKKPSDRLRTVLAVCLTLA 286
>At3g11380.1 68416.m01384 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 541
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 311 LMIYNIILLDSKHKRVHVSIILRTKL 234
L + NI+L D KHK + I+ R +
Sbjct: 500 LSVVNILLCDMKHKNIEPDIVTRNNV 525
>At2g16960.1 68415.m01954 importin beta-2 subunit family protein
contains weak hit to Pfam PF02985: HEAT repeat (4
copies); contains weak hit to Pfam PF03130: PBS lyase
HEAT-like repeat (2 copies); supported by tandem
duplication of importin beta family protein
(TIGR_Ath1:At2g16950) [Arabidopsis thaliana]; similar to
Importin beta-2 subunit (Karyopherin beta-2 subunit)
(Transportin) (M9 region interaction protein) (MIP)
(Swiss-Prot:Q92973) [Homo sapiens]
Length = 547
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 1 DCRFSLPQINCHFAMTKNSNSQGSNTSAAN--AIALGAMTV 117
D R S + CH +TK++N G N SAAN A+G + V
Sbjct: 326 DVRESAFALICH--LTKSANFSGENLSAANNACKAIGELAV 364
>At1g71830.1 68414.m08301 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 625
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +1
Query: 67 GSNTSAANAIALGAMTVVAVGTFLFTWWQERE 162
G + A +A GA + A F WW+ R+
Sbjct: 235 GITGAIAGGVAAGAALLFAAPAIAFAWWRRRK 266
>At4g13620.1 68417.m02120 AP2 domain-containing transcription
factor, putative similar to AP2 domain containing
protein RAP2.4 [Arabidopsis thaliana] GI:2281633;
contains Pfam profile PF00847: AP2 domain
Length = 388
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 210 LLSSPIRALSSVRWGNLPFLPPSKEKCSDRHNRH 109
LL S I+ +SS + N P PP K ++ N H
Sbjct: 306 LLESKIQQISSSQVSNSPSPPPPKVGTPEQKNHH 339
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 25.8 bits (54), Expect = 6.3
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 42 DDQEF*FA-GQQHIRC*CYSTRRDDGCGGRNISLYLVARKGGSPTARSSRRES 197
DD EF A +++R Y +RRD R S +G SP+ SR S
Sbjct: 175 DDTEFRNAFSHEYVRVREYDSRRDSRSPSRGRSYSKSRSRGRSPSRSRSRSRS 227
>At1g63810.1 68414.m07221 nucleolar RNA-associated family protein /
Nrap family protein contains Pfam profile PF03813: Nrap
protein; similar to nucleolar RNA-associated protein
alpha (GI:18539461) [Mus musculus]
Length = 1053
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 122 RSEHFSLLGGKKGRFP 169
RS+H S++ G +GRFP
Sbjct: 726 RSQHASMINGLQGRFP 741
>At1g34210.1 68414.m04245 somatic embryogenesis receptor-like kinase
2 (SERK2) nearly identical to somatic embryogenesis
receptor-like kinase 2 [Arabidopsis thaliana]
GI:14573457; contains Pfam domains PF00560: Leucine Rich
Repeat and PF00069: Protein kinase domain; identical to
cDNA somatic embryogenesis receptor-like kinase 2
(SERK2) GI:14573456
Length = 628
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 85 ANAIALGAMTVVAVGTFLFTWWQERE 162
A +A GA + A F WW+ R+
Sbjct: 244 AGGVAAGAALLFAAPALAFAWWRRRK 269
>At5g16000.1 68418.m01871 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 638
Score = 25.4 bits (53), Expect = 8.3
Identities = 8/33 (24%), Positives = 19/33 (57%)
Frame = +1
Query: 61 SQGSNTSAANAIALGAMTVVAVGTFLFTWWQER 159
S+ + A ++G ++++ + LF WW++R
Sbjct: 242 SRNHKMAIAVGSSVGTVSLIFIAVGLFLWWRQR 274
>At5g15360.1 68418.m01798 hypothetical protein
Length = 253
Score = 25.4 bits (53), Expect = 8.3
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +1
Query: 1 DCRFSLPQINCHFAMTKNSNSQG---SNTSAANAIALGAMTVVAVGTF 135
D RF LPQI C F+ + + S ++ +A+ L A VV T+
Sbjct: 183 DQRFGLPQIACAFSNSSHLQDMSHLFSALASNSAVDLSARAVVERTTY 230
>At5g07760.1 68418.m00888 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 853
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 163 PPFLATK*REMFRPPQPSSRLVL*H*QRMCCC 68
PP A + R + RPP P L + + +CCC
Sbjct: 57 PPPPAMRRRVLPRPPPPPPPLPMFDAEVLCCC 88
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,031,059
Number of Sequences: 28952
Number of extensions: 130838
Number of successful extensions: 351
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 340508912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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