BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11o24 (159 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 25 1.0 SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha... 23 4.1 SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 23 5.4 SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 23 5.4 SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 22 9.5 SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 22 9.5 SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 22 9.5 SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe... 22 9.5 >SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 440 Score = 25.4 bits (53), Expect = 1.0 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = -1 Query: 159 SMSQSELKSSGFLNTLFV 106 SM +E KSSG L TLFV Sbjct: 177 SMLDAEKKSSGILQTLFV 194 >SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccharomyces pombe|chr 2|||Manual Length = 547 Score = 23.4 bits (48), Expect = 4.1 Identities = 8/22 (36%), Positives = 15/22 (68%) Frame = +2 Query: 92 LKVFITNNVFKKPLDFNSDCDM 157 +K F+++ +FKKP+ N D+ Sbjct: 394 VKRFVSDKIFKKPITVNEWWDL 415 >SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual Length = 1828 Score = 23.0 bits (47), Expect = 5.4 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = +2 Query: 62 TPVNTISRESLKVFIT 109 TPV T+S E L++FIT Sbjct: 1515 TPVPTLSPEILELFIT 1530 >SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosaccharomyces pombe|chr 2|||Manual Length = 933 Score = 23.0 bits (47), Expect = 5.4 Identities = 10/16 (62%), Positives = 11/16 (68%) Frame = +1 Query: 10 RTLASFGCSQNDGKSN 57 RT +SFG ND KSN Sbjct: 603 RTSSSFGIFNNDKKSN 618 >SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 900 Score = 22.2 bits (45), Expect = 9.5 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = +2 Query: 44 TESXMSTPVNTISRESLKVFITNNVFKKPLD 136 T+S VN +RE+ VF+ F+K L+ Sbjct: 364 TDSLHELVVNNETREASLVFLEKGDFEKALE 394 >SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces pombe|chr 1|||Manual Length = 2244 Score = 22.2 bits (45), Expect = 9.5 Identities = 7/18 (38%), Positives = 12/18 (66%) Frame = +3 Query: 105 SRITCSRNRWISILIVTW 158 ++I C NR + +L+V W Sbjct: 275 NQIRCFLNRGVELLVVPW 292 >SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 510 Score = 22.2 bits (45), Expect = 9.5 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = -1 Query: 159 SMSQSELKSSGFLNTLFVMNTFKLSLLIVFTGV 61 S + S SSG + +TF LS VF G+ Sbjct: 469 SSAHSSGSSSGSSSATSSASTFNLSRFYVFAGI 501 >SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe|chr 2|||Manual Length = 523 Score = 22.2 bits (45), Expect = 9.5 Identities = 8/26 (30%), Positives = 15/26 (57%) Frame = -3 Query: 82 AYRIHRGRHXTFRHFENIQTKQAYAP 5 AYR + H F+HF +++ + +P Sbjct: 331 AYRPSKNIHSMFQHFNSMKKNKNNSP 356 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 583,326 Number of Sequences: 5004 Number of extensions: 7353 Number of successful extensions: 22 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 22 length of database: 2,362,478 effective HSP length: 33 effective length of database: 2,197,346 effective search space used: 41749574 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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