Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o24
         (159 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0971 - 12807981-12808094,12808949-12809053,12809236-128092...    26   4.8  
12_01_0465 + 3640736-3640817,3640898-3641088,3641266-3641789,364...    25   6.3  

>03_02_0971 -
           12807981-12808094,12808949-12809053,12809236-12809295,
           12809399-12809537,12809648-12809832,12809926-12810009,
           12810093-12810215,12810617-12810796,12811017-12811092,
           12811178-12811277,12811355-12811430,12812155-12812244,
           12812342-12812449,12813583-12813651,12813751-12813921,
           12814002-12814072,12814263-12814360,12814659-12814719,
           12814935-12814971,12815217-12815308,12815428-12815549,
           12816281-12816414
          Length = 764

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 41  MTESXMSTPVNTISRESLKVFITNNVFKKPL 133
           M ES  S P ++  R+SLK   T N F+K L
Sbjct: 417 MLESVESNPKSSNIRKSLKDIATENEFEKRL 447


>12_01_0465 +
           3640736-3640817,3640898-3641088,3641266-3641789,
           3643726-3644029
          Length = 366

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 107 TNNVFKKPLDFNSD 148
           TN + KKP DFN D
Sbjct: 176 TNRILKKPYDFNPD 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,595,458
Number of Sequences: 37544
Number of extensions: 44830
Number of successful extensions: 94
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 14,793,348
effective HSP length: 33
effective length of database: 13,554,396
effective search space used: 257533524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)