Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o24
         (159 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29118| Best HMM Match : GRP (HMM E-Value=8)                         26   5.5  
SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.6  

>SB_29118| Best HMM Match : GRP (HMM E-Value=8)
          Length = 333

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 28  GCSQNDGKSNVDPGEYDKQG 87
           GC  +DG S VD G  D  G
Sbjct: 46  GCGDSDGDSGVDSGSCDGDG 65


>SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2309

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 47   ESXMSTPVNTISRESLKVFITNNVFKKPLDFNSD 148
            ES   +  N  S + L  F+T +  K  +DFNSD
Sbjct: 1553 ESEEVSSDNESSSDLLMSFLTKSADKSSVDFNSD 1586


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,393,851
Number of Sequences: 59808
Number of extensions: 58851
Number of successful extensions: 87
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 16,821,457
effective HSP length: 32
effective length of database: 14,907,601
effective search space used: 298152020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)