Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o23
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    27   2.6  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    26   3.4  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   4.5  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   5.9  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    25   5.9  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    25   7.8  

>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 309 FMSIILSVP*QTNCKILDSLLVCVLPKLIIYG 404
           F  ++   P Q N K L SLL  +LP +  YG
Sbjct: 541 FRVLLTGTPLQNNLKELISLLAFILPHVFDYG 572


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 120 KQHRRTLRLKTGMRWRFPNVSCPHEPFLIALGTFLVGNR 4
           K H     ++T +R+     S P  P  + LGT+ V NR
Sbjct: 235 KSHNSLPSIRTNVRYSNSKPSTPLSPEDVDLGTYTVKNR 273


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 43   WFVWARNIWKSPP 81
            W VWA  +W +PP
Sbjct: 1129 WEVWAPRVWSNPP 1141


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 136 YRSVTKAAPPNPPAEDRNAVAISKCFLPTRTIFNSS 29
           Y+SV  AAPP PP++ R     +  + P +  F +S
Sbjct: 116 YQSVPSAAPP-PPSQQRYMPDSAVAYNPNQDQFGNS 150


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = -3

Query: 165 LRRILSSP*NIGALQKQHRRTLRLKTGMRWRFPNVSCPHEPFLIALGTFL 16
           + ++L     + +L  +  R    K  +RWR+ +V C     +I    FL
Sbjct: 63  VHQVLPQERGVFSLSSKSLRLSNRKGTIRWRYHSVPCVQRSMIILYSCFL 112


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 309 FMSIILSVP*QTNCKILDSLLVCVLPKL 392
           F  +I   P Q N K L SLL  +LPK+
Sbjct: 566 FRLLITGTPLQNNLKELISLLAFMLPKV 593


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,196
Number of Sequences: 5004
Number of extensions: 43456
Number of successful extensions: 83
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)