Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o21
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    27   1.9  
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    27   1.9  
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    27   2.5  
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    27   2.5  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    27   3.3  
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce...    27   3.3  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    27   3.3  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    26   4.3  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    26   5.7  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    26   5.7  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    26   5.7  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   7.6  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   7.6  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    25   7.6  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   7.6  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    25   7.6  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   10.0 

>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
 Frame = +3

Query: 342 SNLARAI-DKLPVAPHYLQETLKHEP 416
           +++ARA+ +KL V P+YLQ T+ H P
Sbjct: 853 TDMARAVANKLNVDPNYLQFTMAHLP 878


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 429 EAAKFEPKYEIEPYYTGEPVPLSNSKYI 512
           E  +FE +  IEP YTG PV   +++ I
Sbjct: 6   EKKRFELEKSIEPIYTGGPVAFDSNEKI 33


>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 576 HGALMSPYEAINSSPSFGESFPSV 647
           HGA  +P+   + +P  G+SFPS+
Sbjct: 338 HGAHQAPFGFYSEAPQQGDSFPSL 361


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -2

Query: 642 REKIHQMTDYC*WLRKATSGPRGIEKIVSHLSHTRGKHSAH 520
           +EK+ +    C + R +   P   E + SHL    G  S H
Sbjct: 78  KEKLEEFKKRCSYYRGSYDKPEDFEGLNSHLCEREGDRSTH 118


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
 Frame = +3

Query: 303 NLLNYPK--ENSEIISNLARAIDKLPVAPHYLQETLKHEPKYVLEAAKFEPKYEIEPYYT 476
           NL++ P+  E   I+S+++  ++K  V    +  T   + + V E        E +   T
Sbjct: 28  NLVHSPEGEEFENILSSVSATVEKKEVNNKLIMPTANRDNQGVREELLVSSFKERKLLNT 87

Query: 477 GEPVPLSNSKYIGSYEPNVFRAYDSNARRSSRSHGALM 590
                  NS  IGSYE   F+  +S    S R HG ++
Sbjct: 88  NSANLRLNS--IGSYEMIDFKQINSEFFLSHRQHGFVL 123


>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 498

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 522 EPNVFRAYDSNARRSSRSHGALMSPYEAINSSPSFG-ESFPSVYGSPSKS 668
           +PN FR   +  R+SS  +  +  P  A+N++ S+G E  PS   S   S
Sbjct: 431 DPNDFRP--AVERQSSTMNTRMSQPSSAVNTNRSYGSEQIPSYADSQGNS 478


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +3

Query: 498 NSKYIGSYEPNVFRAYDSNARRSSRSHGALMSPYEAINS---SPSFGES 635
           N KYI SY P    A  S  ++++  H +  S ++   S   SPSF E+
Sbjct: 535 NIKYIDSYVPEYSIARQSANQKTNEQHPSSTSLHQQSTSDLKSPSFHEN 583


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 333 EIISNLARAIDKLPVAPHYLQETLKHEPKYVLEAAKFEPKYEIEPYY 473
           + I+  +  +DK    PH +         ++ E AKF PK +IE YY
Sbjct: 421 QTIAFFSLLMDKNINGPHLVIAPASTMENWLREFAKFCPKLKIELYY 467


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 286 CSAMAKLFSTFGSNAVCF 233
           C A+A+ F  FG N  CF
Sbjct: 462 CVALAQFFFNFGPNTTCF 479


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = +3

Query: 435 AKFEPKYEIEPYYTGEPVPL--SNSKYIGSYEPNVFRAYDSNARRSSRSHGALMSPYEAI 608
           A+  P     PY    P PL  SN+ ++   E N  R       R  RS+G+  +   A+
Sbjct: 249 ARTVPDASRHPYPDRLPTPLTPSNAHWVVHNEGNRNRR-----ERPCRSNGSSPTSESAL 303

Query: 609 NSSPSFGESFPSVYGS 656
           NS  S   S PS+  S
Sbjct: 304 NSPASSVSSLPSLGAS 319


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +3

Query: 522 EPNVFRAYDSNARRSSRSHGALMSPYEAINSSPSFGESFPSVYGSPSKSL 671
           EP+VF+   S +  S +    L +     +S+PS   S  S  GSPS+SL
Sbjct: 59  EPHVFQ--HSQSPLSHKDASLLATMPSVASSNPSLISSGSSQTGSPSQSL 106


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 172 HQSTAQLSRQPSHPRHVK*PQNRQHWIR 255
           H+ +  L RQPS P  V     R H+IR
Sbjct: 876 HEGSNDLERQPSSPDTVHPGIKRSHFIR 903


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 333  EIISNLARAIDKLPVAPHYLQETL 404
            E+ +NLA AID+LP++ +Y    L
Sbjct: 1208 ELENNLALAIDRLPLSRNYFNAGL 1231


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 22/69 (31%), Positives = 28/69 (40%)
 Frame = +3

Query: 465 PYYTGEPVPLSNSKYIGSYEPNVFRAYDSNARRSSRSHGALMSPYEAINSSPSFGESFPS 644
           PYY  EP+PL  S     Y    +   D+    S  + GA  S    INS  S+      
Sbjct: 368 PYYRREPIPLRPSSRFYEYTRPTYGRTDT----SCSAPGAFCS--TQINSPSSYINYSKC 421

Query: 645 VYGSPSKSL 671
              SP+ SL
Sbjct: 422 APSSPTLSL 430


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = +3

Query: 333 EIISNLARAIDKLPVAPHYLQETLKHEPKYVLEAAKFEPKYEIEPYY 473
           ++++  A  +++    PH +         ++ E A+F P   +EPYY
Sbjct: 584 QVVAFFALLLEQGHHGPHLVVVPSSTLENWLRELARFCPSLRVEPYY 630


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -1

Query: 574 DREDRLAFESYARKTFGS*EPMYFELDNGTGSPV*YGSISYFGSNLAASRT 422
           D ++ L   + A    G+ +P+  E+D G+GS +  G  S+   +L A ++
Sbjct: 349 DADEVLRSFNLANDPIGAVDPLTLEIDQGSGSQL-LGQQSFANDSLNAKQS 398


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 615 SPSFGESFPSVYGSPS 662
           SPSF E FPS   SPS
Sbjct: 357 SPSFQEEFPSTSKSPS 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,626
Number of Sequences: 5004
Number of extensions: 51414
Number of successful extensions: 162
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)