BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11o20 (609 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_39600| Best HMM Match : Sushi (HMM E-Value=0) 52 3e-07 SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9 SB_6738| Best HMM Match : DUF1328 (HMM E-Value=2.4) 28 5.1 SB_21467| Best HMM Match : Peptidase_A17 (HMM E-Value=1.1e-22) 28 5.1 SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16) 27 9.0 >SB_39600| Best HMM Match : Sushi (HMM E-Value=0) Length = 1368 Score = 52.4 bits (120), Expect = 3e-07 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 5/110 (4%) Frame = +1 Query: 268 VDRALKITALKS---LRNHSQLLEISCHGIVWLAGWLTFIWLFNSKDLYQLQVNMXXXXX 438 V ++L I A K +R +LEIS HG+ W+ G L I+L+ + Q+ +N Sbjct: 41 VSQSLSICATKDASFMRFVLIILEISGHGVPWITGSLLAIYLYRGLE-QQIALNFLLALI 99 Query: 439 XXXXXXXXXXXFVRRRRPV--PMNKLMEVGPDKFSFPSGHASRAVLISFI 582 +R RPV + + V D FSFPSGH++RA +++ I Sbjct: 100 IDLAVVGTTKVLFKRSRPVYNAQDMFVTVSVDNFSFPSGHSTRAAMMAGI 149 >SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 664 Score = 28.7 bits (61), Expect = 3.9 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Frame = +1 Query: 133 VQLVHLW*KK*ASTMDMLGETEKKRQTPPMLKKILQYDVQITKTFVDRALKITALKSLRN 312 + +V+L +K + L E++ QTP KK+ + +IT+ + LK + SL + Sbjct: 50 ISMVNLIKRKIKDFVQSLARLERQDQTPESRKKVAELQFRITE--LKNKLKELEM-SLPS 106 Query: 313 HSQLLEISCHGI-VWLAGWLT 372 + + + HGI VW LT Sbjct: 107 SAGITDSIFHGILVWYYSTLT 127 >SB_6738| Best HMM Match : DUF1328 (HMM E-Value=2.4) Length = 391 Score = 28.3 bits (60), Expect = 5.1 Identities = 15/47 (31%), Positives = 24/47 (51%) Frame = +1 Query: 235 LQYDVQITKTFVDRALKITALKSLRNHSQLLEISCHGIVWLAGWLTF 375 + Y + + VD A+ I SL SQ + ++ +V+ A WLTF Sbjct: 103 MAYSASLLQGRVD-AMSIDTAASLLTRSQWISLNIQIVVYFAVWLTF 148 >SB_21467| Best HMM Match : Peptidase_A17 (HMM E-Value=1.1e-22) Length = 1043 Score = 28.3 bits (60), Expect = 5.1 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = +1 Query: 190 ETEKKRQTPPMLKKILQYDVQITKTFVDRALKITALK 300 ET K+ + P +K L+YD++I +RALK A K Sbjct: 35 ETRKELRQRPRTEKGLEYDLEIATKKRNRALKDRAAK 71 >SB_23869| Best HMM Match : rve (HMM E-Value=2.2e-16) Length = 1456 Score = 27.5 bits (58), Expect = 9.0 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = +3 Query: 297 KVFTEPFSITRDIMSW 344 +V TEPFSI RD+ W Sbjct: 799 RVVTEPFSIRRDVRRW 814 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,524,909 Number of Sequences: 59808 Number of extensions: 317689 Number of successful extensions: 676 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 626 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 674 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1487884875 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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