Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o18
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40800-1|ABI18145.1|  150|Caenorhabditis elegans Hypothetical pr...    30   1.6  
L16621-11|AAA28226.2|  192|Caenorhabditis elegans Hypothetical p...    29   3.7  
Z50741-4|CAO82050.1|  190|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z81540-9|CAD89742.1|  740|Caenorhabditis elegans Hypothetical pr...    27   8.4  
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    27   8.4  

>U40800-1|ABI18145.1|  150|Caenorhabditis elegans Hypothetical
           protein D2096.13 protein.
          Length = 150

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -3

Query: 453 KRFNSFVEIQCLYLLWVRIFGDNVFTRFHIHSAV 352
           +RF SF+ I  ++ L V   GDNV T+FH++  +
Sbjct: 3   RRFTSFLCI--IFFLCVHSRGDNVLTKFHLNGTL 34


>L16621-11|AAA28226.2|  192|Caenorhabditis elegans Hypothetical
           protein ZK688.1 protein.
          Length = 192

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = +1

Query: 241 VDELNTDVPKINTPVLELSPRVLR---KRKSLMPEKSKPSNRRVNMKPRKHVVAENANPK 411
           V+    D   I   ++E+  R+ R   K  +++PE SKP+N  VN  P    +    +P+
Sbjct: 42  VENFYLDNRTIYHKIIEIEKRIERIEEKENNVLPEPSKPNNPVVN--PPVSPIQPKTDPE 99

Query: 412 QIE 420
           Q E
Sbjct: 100 QSE 102


>Z50741-4|CAO82050.1|  190|Caenorhabditis elegans Hypothetical
           protein F55G7.4 protein.
          Length = 190

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = +1

Query: 286 LELSPRVLRKRKSLMPEKSKPSNRRVNMKPRKHVVAENANPKQIEALYLNKTVKSLSQTL 465
           L LSP++ R   S +    K S  +   K +  +  E  NP   E+L  N+  K+ S+TL
Sbjct: 126 LHLSPKIRRSTSSCLRSSKKESLNKNLEKYKPDINTERNNPTSGESL-SNRKSKN-SKTL 183

Query: 466 ETIY 477
            TI+
Sbjct: 184 FTIW 187


>Z81540-9|CAD89742.1|  740|Caenorhabditis elegans Hypothetical
           protein F46B3.17 protein.
          Length = 740

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = +1

Query: 271 INTPVLELSPRVLRKRKSLMPEKSKPSNRRVNMKPRKHVVAENANPKQI 417
           +N   +  SP+ LR++  L P K++   RRV +KP K +  +      I
Sbjct: 670 VNLREIRRSPKKLRRK--LKPGKTEKKLRRVRVKPSKSLADQQRQNSNI 716


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/75 (25%), Positives = 32/75 (42%)
 Frame = +1

Query: 241 VDELNTDVPKINTPVLELSPRVLRKRKSLMPEKSKPSNRRVNMKPRKHVVAENANPKQIE 420
           V+  NT+V K  +   EL    +R    LM E  KP      ++    +  ++A   + +
Sbjct: 89  VEHFNTEVRKQRSSQAELGLVTVRNNVKLMQEALKPDISESRLQEILQMAKQSAERHRND 148

Query: 421 ALYLNKTVKSLSQTL 465
             Y  +TV SL   +
Sbjct: 149 GTY-KRTVGSLDSAI 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,413,003
Number of Sequences: 27780
Number of extensions: 270122
Number of successful extensions: 756
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)