Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o15
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)                 44   1e-04
SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)          42   6e-04
SB_30534| Best HMM Match : EGF (HMM E-Value=0.12)                      33   0.28 
SB_11755| Best HMM Match : GST_C (HMM E-Value=2.7e-05)                 32   0.49 
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.85 
SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.85 
SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_7166| Best HMM Match : RBM1CTR (HMM E-Value=7.6)                    29   2.6  
SB_59680| Best HMM Match : Extensin_2 (HMM E-Value=1.2)                29   4.5  
SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1)                     28   6.0  
SB_47052| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)                      28   6.0  
SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)                   28   6.0  
SB_21789| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_31266| Best HMM Match : PKI (HMM E-Value=1)                         28   7.9  
SB_14336| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.22)              28   7.9  

>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
          Length = 260

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 1/125 (0%)
 Frame = +2

Query: 215 LNPQHTVPTLVDDGLSIWESRAIITYLVNKYAKGSSLYPEDPKARALVDQRLYFDIGTLY 394
           L+P +T+P L     + + S  II YL    A    LY  D   R  VDQ  + DI T  
Sbjct: 43  LSPFNTLPLLETKEGTFFSSNTIIRYLA---ASSDKLYGSDLFQRGQVDQ--WLDITTCD 97

Query: 395 QRFSDYFYPQVFAGAPADKAKN-EKVQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVS 571
              +         G   + AK    + + L  ++K L G+K++ G ++T+AD S+  S++
Sbjct: 98  FEAAVAAVAIAKEGRDVEGAKIVADINKFLGFVEKHLAGRKFLVGDSVTIADFSVATSIA 157

Query: 572 SLEAS 586
            +  S
Sbjct: 158 VILTS 162


>SB_48592| Best HMM Match : Galactosyl_T (HMM E-Value=1.5e-26)
          Length = 492

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 17/51 (33%), Positives = 31/51 (60%)
 Frame = +2

Query: 200 PEYLKLNPQHTVPTLVDDGLSIWESRAIITYLVNKYAKGSSLYPEDPKARA 352
           PE+L +NP   VP +V +G +++ES   I ++   ++   ++ P+DP  RA
Sbjct: 299 PEWLAINPNGLVPVIVHNGNAVYESSICIEFIDEAFSTPVTILPKDPYKRA 349


>SB_30534| Best HMM Match : EGF (HMM E-Value=0.12)
          Length = 521

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 151 KPEPQTGRPTPRG-TAQTRIFEVEPSTHGPDP 243
           +PEP+T  P PR    +TR +  +P T+ PDP
Sbjct: 289 RPEPRTELPQPRTYRPETRTYRPDPRTYRPDP 320



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 151 KPEPQTGRPTPR-GTAQTRIFEVEPSTHGPDP 243
           +P P+T RP PR    Q R +  E  T+ PDP
Sbjct: 282 RPRPKTRRPEPRTELPQPRTYRPETRTYRPDP 313


>SB_11755| Best HMM Match : GST_C (HMM E-Value=2.7e-05)
          Length = 142

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
 Frame = +2

Query: 335 DPKARALVDQRLYFDIGTLYQRFSDYFYPQVFAGAPADKAKNEKVQEALQLLDKFL--EG 508
           DP  RALV Q +   I +  Q   +    Q        +  +  +    Q L+K L    
Sbjct: 18  DPHKRALVRQ-ISMTIASGIQPIQNLKVLQYVGPDKKVEWGHYWIDRGFQCLEKMLVQTA 76

Query: 509 QKYVAGPNLTVADLSLIASVSSLEASDIDFRNTPTL 616
            KY  G ++T+ADL L+  V +     +D    PT+
Sbjct: 77  GKYCVGDDITMADLCLVPQVYNANRFKVDMSRYPTI 112


>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1676

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +1

Query: 454  QEREGPGSPSAARQVPRRSEVRGRTEPHRRRPESHRQ 564
            +E + P  P++  Q  RR+  R RT  H+R  +SHR+
Sbjct: 1386 RELQLPSLPTSGPQYERRTLPRRRTSHHQRHTQSHRK 1422


>SB_3922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 236

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = +2

Query: 197 KPEYLKLNP--QHTVPTLVD-DGLSIWESRAIITYLVNKYAKGSSLYPEDPKARA 352
           KPE+ + +P  +  VPTL   DG  I ES  I  +L + Y K   LYP DP A++
Sbjct: 65  KPEWFQTHPDCEGKVPTLETMDGKLIPESVIICEFLEDYYRK-IPLYPCDPYAKS 118


>SB_7332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1894

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 439 PSRQGQEREGPGSPSAARQVPRRSEVRGRTEPHRRRPESHRQCLQPG 579
           PSR GQ+ + P  P    Q P RS V+   +P R   ++ +   QPG
Sbjct: 589 PSRPGQQHQQPFRPEQQPQQPFRS-VQPPQQPFRADQQTQQPFHQPG 634


>SB_7166| Best HMM Match : RBM1CTR (HMM E-Value=7.6)
          Length = 147

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 445 RQGQEREGPGSPSAARQVPRRSEVRGRTEPHRRRP 549
           R+ Q++ G G+PS ARQ  R     G   P  R P
Sbjct: 97  RRSQQQHGQGNPSRARQQARLQPDEGYPGPSYREP 131


>SB_59680| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
          Length = 412

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +1

Query: 430 CRCPSRQGQEREGPGSPSAARQVPRRSEVRGRTEPHRRRPESHRQCLQP 576
           C+ P+   Q R  PG   A     +R  + G T P+   P   ++ + P
Sbjct: 52  CQTPAAASQARPAPGRAPARNPAQQRVNLPGYTSPYGFSPYGKKKSVVP 100


>SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1)
          Length = 366

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 157 EPQTGRPTPRGTAQTRIFEVEPSTHGP 237
           EP+T R + R T Q  I E EP   GP
Sbjct: 208 EPKTRRTSRRRTKQEEIVEEEPKQEGP 234


>SB_47052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +2

Query: 296 VNKYAKGSSLYPEDPKARALVDQRLYFDIGTLYQRFSD 409
           V KY KG+     DP   A V+ + +FD+G +++ FSD
Sbjct: 309 VEKYLKGTKRV--DPSLNAAVNGQ-FFDLGLMHKYFSD 343


>SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)
          Length = 1478

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = +1

Query: 415 LSPSICRCPSRQGQEREGPGSPSAARQV 498
           +SP + + P+R+G++R+  G P A+ ++
Sbjct: 716 VSPGVPKTPARRGRKRKAEGDPKASYKI 743


>SB_31796| Best HMM Match : SAP (HMM E-Value=3.5e-10)
          Length = 1029

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +2

Query: 299 NKYAKGSSLYPEDPKARALVDQRLYFDIGTLYQRFSDYFYPQVFAGAPA 445
           N   + SSL  + P A  L  Q+LY  +  LYQ      YP  F G P+
Sbjct: 293 NGEVEKSSLPMDSPYALMLQQQQLYLQLQVLYQN-----YPCQFVGLPS 336


>SB_21789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 436 CPSRQGQEREGPGSPSAARQVPRRSEVRGRTEPHRRRPESHRQCL 570
           C  R  + R+G  S   AR  P  +  RGR +P R+    HR+ L
Sbjct: 14  CIVRNHRPRDGQQSRRTARSPPHSTTDRGRRDPSRK--GMHRKLL 56


>SB_31266| Best HMM Match : PKI (HMM E-Value=1)
          Length = 1507

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 439 PSRQGQERE-GPGSPSAARQVPRRSEVRGRTEPHRRRP 549
           PS     R+ GP SP  +RQ P  S  R    P  RRP
Sbjct: 421 PSSPSPRRQTGPPSPKPSRQPPPSSPQRIAPTPGHRRP 458


>SB_14336| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.22)
          Length = 774

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 275 RAIITYLVNKYAKGSSLYPEDPKARALVDQRLYFDIGTLY 394
           R  I+Y+ N+Y+K ++ Y E     A     +Y D   LY
Sbjct: 302 RGGISYIANRYSKANNKYMESYDETAPSKYFMYLDANNLY 341


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,068,010
Number of Sequences: 59808
Number of extensions: 410210
Number of successful extensions: 1536
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1534
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)