Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o10
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    27   3.1  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    26   4.1  
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    26   4.1  
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    26   5.4  
SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase |Sc...    25   9.5  

>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = -1

Query: 559 EHHRSY--PQYKMP*PHFFHNFVPCPVC 482
           +HH  +  P +  P PHF +N  P P C
Sbjct: 167 QHHHPHTRPPHHPPHPHFHNNNYPPPYC 194


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 382 EIKKSHVDNEAISNDVAAQAHLENYALKL 468
           E +K   ++EA S  + A+ HLE+YA  L
Sbjct: 519 EAEKYKAEDEAESGRIQAKNHLESYAYSL 547


>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 148 KRKCLALIYDLEMANIPDCPMSLKSIQHYLKTAAEH 255
           K +CLA+    +  N   CP+  K+I++ L    +H
Sbjct: 474 KSRCLAMQLKFQSQNTVPCPVCQKNIENELGILNQH 509


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 376 LEEIKKSHVDNEAISNDVAAQAHLENYALKL 468
           + E +K   ++EA ++ + A+ HLE+YA  L
Sbjct: 517 VSEAEKYKAEDEAETSRIQAKNHLESYAYSL 547


>SPAC869.08 |pcm2||protein-L-isoaspartate O-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 93  GSVFEEIGTYDDNIYLHQK 37
           G +   IGTY  NIYL +K
Sbjct: 183 GKILIPIGTYSQNIYLIEK 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,957
Number of Sequences: 5004
Number of extensions: 51977
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)