Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o10
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   1.1  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   1.9  
DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    22   4.5  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +3

Query: 249 RTRQPRCGCSILVSPSRFTNRPENNYQENP*RNQSFNGSY 368
           R+R+P+   S+        N  + NY  N   N ++N +Y
Sbjct: 308 RSREPKIISSLSNKTIHNNNNYKYNYNNNNYNNNNYNNNY 347


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +2

Query: 467 CFCMLTNRTGNKIMEKMWSRHFILRV*SMMFLPHLV 574
           CF   TNR   K    M S + I       FLP LV
Sbjct: 178 CFPRATNRDIKKCSYNMDSSYVIFSAMGSFFLPMLV 213


>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
          transcriptase protein.
          Length = 42

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 90 SVFEEIGTYDDNIYLHQKIIVTQKFVILFI 1
          S+ ++ GTY     LH KI++ +     FI
Sbjct: 9  SLKKDFGTYFQQYCLHHKILIKKNKCNAFI 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,063
Number of Sequences: 438
Number of extensions: 3599
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)