Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o08
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    26   5.8  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    25   7.6  
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p...    25   7.6  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   7.6  

>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 165 KHNGYFQKPKSIEDIVAKYNHYWKTNYL 82
           K N Y QK KSI+ I    N +W   Y+
Sbjct: 859 KLNLYNQKEKSIKTIGRYINRFWALKYI 886


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 337 VNLLHSKRKGIFIHPTAMYRNNL 405
           V LL SK K +F+HPT+  ++N+
Sbjct: 29  VALLFSKSK-VFVHPTSKMKDNI 50


>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1040

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 7/21 (33%), Positives = 16/21 (76%)
 Frame = -1

Query: 68  SLVFQNKIIFNRITSRYNNHE 6
           +++FQNK++   + +RY ++E
Sbjct: 686 AIIFQNKLLLRTLENRYEDYE 706


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -3

Query: 198 MARVTSLFRMQKHNGYFQKPKSIEDIV 118
           MA +TS+ R++KH  +FQ+ + ++  +
Sbjct: 309 MAFLTSVIRIRKHAEFFQQDQVLQQFI 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,898
Number of Sequences: 5004
Number of extensions: 59738
Number of successful extensions: 156
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)