Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o08
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0588 - 4224348-4224516,4224674-4224767,4224872-4225490,422...    29   2.6  
10_01_0132 - 1601421-1601657,1601761-1601922,1602812-1603721,160...    29   4.5  
07_01_0042 - 334417-334431,334563-334688,334852-335136,335220-33...    28   7.9  
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075...    28   7.9  
04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019           28   7.9  

>06_01_0588 -
           4224348-4224516,4224674-4224767,4224872-4225490,
           4225609-4225734,4225819-4226487,4226728-4226853,
           4226940-4227266,4227366-4227439,4228469-4228583,
           4228871-4229164
          Length = 870

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 494 LESGRLEALSRALSILNGDSAVQGRVESYSCKMAGSEKAFYKKFTAD 634
           L+ G+  +L RAL     +  + G  + Y C+    +    KKFT D
Sbjct: 182 LDIGKATSLVRALQNFTAEELLDGGEKQYQCQRCRKKVVAKKKFTID 228


>10_01_0132 -
           1601421-1601657,1601761-1601922,1602812-1603721,
           1604587-1604651,1604704-1604746,1605086-1605128,
           1605874-1605955,1606270-1606464,1606567-1606721,
           1611207-1611435,1611538-1611693,1612539-1613476,
           1614946-1614967
          Length = 1078

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -1

Query: 338 TLGIKFDFCSSSARMKCGNITKKEKRMVLEVAVLV 234
           +L I FDF   + R++C  + KKE+  +L+  ++V
Sbjct: 585 SLLIAFDFGEEATRLQCEMVVKKEEATLLQCEMVV 619


>07_01_0042 -
           334417-334431,334563-334688,334852-335136,335220-335368,
           336239-336536,337030-337131,337245-337613,337973-338115,
           338334-338518,339246-339475,339734-339821,340158-340253,
           340397-340512,340604-340852,340950-341175,341411-341622
          Length = 962

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 289 HFIRAEEEQKSNLIPSVNLLHSKRKGIFIHPTAMYRN 399
           HF+R    Q  N     +LL +   G F+HPT +++N
Sbjct: 579 HFMRHSANQIDNPTSVQHLLVNGCGGAFLHPTHVFKN 615


>04_04_0491 - 25605560-25605684,25605826-25605928,25606026-25607592,
            25608694-25610198
          Length = 1099

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 665  TMLEDYE*FLHQQ*TSYRKLSHCQPFCSCSFQRGLVQ 555
            + LE  E   H++  S RKL H  PF S   ++ LVQ
Sbjct: 969  SQLEMLELRCHKKLVSLRKLQHISPFHSLRLRKELVQ 1005


>04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019
          Length = 508

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -1

Query: 437 IIGAFIFIL---HHKLFLYIAVGCMNIPFLF 354
           I+G F F+    H ++FL++ +GC  + F+F
Sbjct: 436 IVGVFGFLYTEYHIRIFLFVLIGCNLVGFIF 466


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,594,755
Number of Sequences: 37544
Number of extensions: 323748
Number of successful extensions: 694
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)