Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o08
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098499-1|AAC67397.1|  245|Caenorhabditis elegans Hypothetical ...    33   0.19 
U39745-6|AAA80448.2|  392|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF125442-9|AAD12788.1|  333|Caenorhabditis elegans Hypothetical ...    29   3.0  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z68342-9|CAD91630.2|  626|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z92830-12|CAE17777.1|  191|Caenorhabditis elegans Hypothetical p...    28   5.3  
AF016682-5|AAB66184.1|  409|Caenorhabditis elegans Hypothetical ...    28   5.3  
AC006776-1|AAF60626.2|  616|Caenorhabditis elegans Hypothetical ...    28   7.0  
U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AY594354-1|AAT01444.1|  539|Caenorhabditis elegans cofactor-inde...    27   9.3  
AF039713-12|AAO12419.1|  521|Caenorhabditis elegans Hypothetical...    27   9.3  
AF039713-11|AAB96720.1|  539|Caenorhabditis elegans Hypothetical...    27   9.3  

>AF098499-1|AAC67397.1|  245|Caenorhabditis elegans Hypothetical
           protein C43H8.2 protein.
          Length = 245

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = +2

Query: 485 MKLLESGRLEALSRALSILNGDSAVQGRVESYSCKMAGSEKAFYK 619
           MK LES  ++  S+ L     D  +  ++E+YS KM  SEK  +K
Sbjct: 1   MKFLESSEMDVFSQTLVTGAIDCVIDFKLETYSSKMVTSEKKQWK 45


>U39745-6|AAA80448.2|  392|Caenorhabditis elegans Hypothetical
           protein F41C6.7 protein.
          Length = 392

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/70 (28%), Positives = 36/70 (51%)
 Frame = +1

Query: 136 FWFLKITVVFLHSKK*SDASHCVNPSTSLWIINTSTATSKTILFSFFVMFPHFIRAEEEQ 315
           FW  K +  FL + + S+    +N +        S +T  ++ F ++V F H + A ++Q
Sbjct: 8   FWLFKNSQTFLFTLRNSEKVSILNNNFG------SRSTFYSLQFLYYV-FSHRMSASQKQ 60

Query: 316 KSNLIPSVNL 345
           K   +P+VNL
Sbjct: 61  KVVKVPTVNL 70


>AF125442-9|AAD12788.1|  333|Caenorhabditis elegans Hypothetical
           protein H04M03.3 protein.
          Length = 333

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = -1

Query: 326 KFDFCSSSARM---KCGNITK-KEKRMVLEVAVLVLIIHKLVDGFTQWLASLHFLECRNT 159
           +FD C  +A +   K G   + +E  M+  +    +I HK++D       SLHF+   + 
Sbjct: 125 QFDICILNAGVMNPKPGRTREDREATMMTNLVSSYMIAHKIIDSRRDDQRSLHFVFSTSI 184

Query: 158 TVIFKNQNP 132
            V F N  P
Sbjct: 185 LVKFHNATP 193


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 656  EDYE*FLHQQ*TSYRKLSHCQPFCSCSFQRGLVQH 552
            E YE F+++    +RK   C PFC+    R  ++H
Sbjct: 2189 ESYETFVNEYIHRWRKFGMCSPFCNEDETRVFLEH 2223


>Z68342-9|CAD91630.2|  626|Caenorhabditis elegans Hypothetical
           protein F38E11.12 protein.
          Length = 626

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
 Frame = -3

Query: 210 WVYTMARVTSLF------RMQKHNGYFQKPKSIEDIVAKYNHYWKTN 88
           W YT  ++T  +      R   +N YF   ++ ED + +  H+W+T+
Sbjct: 239 WPYTPEKITDAYFVGCDGRTDCYNPYFYYDEAREDHLVELYHFWRTD 285


>Z92830-12|CAE17777.1|  191|Caenorhabditis elegans Hypothetical
           protein F11A5.15 protein.
          Length = 191

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = -1

Query: 497 PIVSFSLILFCSNYPINRLVIIGAFIFILHHKLFLYIA---VGCMNIPFLFECK 345
           P+++ S++ FC+ + +  L  I   I++   KLF  I    V C+N   +F+ K
Sbjct: 138 PLITISVLFFCAFFILIFLFCILGSIYVFMAKLFRNIEQTYVACLNRLMIFDEK 191


>AF016682-5|AAB66184.1|  409|Caenorhabditis elegans Hypothetical
           protein T07D3.4 protein.
          Length = 409

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = -3

Query: 132 IEDIVAKYNHYWKTNYLIS*TIFSFSKQNNLQSNHK 25
           +E I+A+Y   WK ++L S   +++S Q N+Q+N K
Sbjct: 341 LEKILAEYGEDWKKDHLSSEYRWNYS-QKNVQTNGK 375


>AC006776-1|AAF60626.2|  616|Caenorhabditis elegans Hypothetical
           protein Y46H3C.4 protein.
          Length = 616

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 452 SDNLNRIKSE-KMKLLESGRLEALSRALSILNGDSAVQGRVESYSCKMAGSEKAF 613
           +D + + K E K+KL ESG ++    A   +  D  V    ++   K++G E  F
Sbjct: 355 ADPVKKWKEEQKLKLRESGEMDEDDLATVAVEDDEGVSSAAKAVETKLSGYEYLF 409


>U53340-3|AAA96208.1|  578|Caenorhabditis elegans Hypothetical
           protein F02E8.5 protein.
          Length = 578

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 193 SHCVNPSTSLWIINTSTATSKTILFSFFVMFPHFIRAE 306
           S CV+PS   W+I      +K     +FV+F     AE
Sbjct: 13  SRCVHPSCVAWVIFIHFCFAKNCSILYFVLFQFTFFAE 50


>AY594354-1|AAT01444.1|  539|Caenorhabditis elegans
           cofactor-independent phosphoglyceratemutase protein.
          Length = 539

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 318 LLFFFRADEMREHHKKGEKDGFRSCSTSINYPQTC*WVYTMARVTSLF 175
           + F +RAD MRE       D ++ C++ + +P     VY M +  + F
Sbjct: 279 IFFDYRADRMREISAAMGMDRYKDCNSKLAHPSNL-QVYGMTQYKAEF 325


>AF039713-12|AAO12419.1|  521|Caenorhabditis elegans Hypothetical
           protein F57B10.3b protein.
          Length = 521

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 318 LLFFFRADEMREHHKKGEKDGFRSCSTSINYPQTC*WVYTMARVTSLF 175
           + F +RAD MRE       D ++ C++ + +P     VY M +  + F
Sbjct: 261 IFFDYRADRMREISAAMGMDRYKDCNSKLAHPSNL-QVYGMTQYKAEF 307


>AF039713-11|AAB96720.1|  539|Caenorhabditis elegans Hypothetical
           protein F57B10.3a protein.
          Length = 539

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 318 LLFFFRADEMREHHKKGEKDGFRSCSTSINYPQTC*WVYTMARVTSLF 175
           + F +RAD MRE       D ++ C++ + +P     VY M +  + F
Sbjct: 279 IFFDYRADRMREISAAMGMDRYKDCNSKLAHPSNL-QVYGMTQYKAEF 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,346,666
Number of Sequences: 27780
Number of extensions: 328671
Number of successful extensions: 878
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)