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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o08
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13240.1 68418.m01521 expressed protein prdeicted proteins, S...    38   0.005
At5g45470.1 68418.m05586 expressed protein contains Pfam domain,...    29   3.7  
At5g19460.1 68418.m02319 MutT/nudix family protein similar to SP...    29   3.7  
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical...    28   6.5  
At5g62170.1 68418.m07804 expressed protein various predicted pro...    27   8.6  
At4g00520.1 68417.m00071 acyl-CoA thioesterase family protein co...    27   8.6  
At3g25950.1 68416.m03234 hypothetical protein                          27   8.6  

>At5g13240.1 68418.m01521 expressed protein prdeicted proteins,
           Schizosaccharomyces pombe
          Length = 224

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +2

Query: 485 MKLLESGRLEALSRALSILN-GDSAVQGRVESYSCKMAGSEK 607
           MK LE   L+ L+  L  LN G+  ++G +E+YSCK AGS+K
Sbjct: 1   MKFLEYTNLDRLNVFLGHLNLGERTIKGCLEAYSCKHAGSDK 42


>At5g45470.1 68418.m05586 expressed protein contains Pfam domain,
           PF04578: Protein of unknown function, DUF594
          Length = 866

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +1

Query: 259 ILFSFFVMFPHFIRAEEEQKSNLIPSVNLLHSKRKGIFIHPTAMYRNNLW 408
           I F F    PHFI++  +  S      + L    K +F+H   M R  LW
Sbjct: 558 IYFEFISRIPHFIKSVWDILSEFFDISDTLDMVHKTLFVHGEPMTR-ELW 606


>At5g19460.1 68418.m02319 MutT/nudix family protein similar to
           SP|P41888 Thiamine pyrophosphokinase (EC 2.7.6.2) (TPK)
           (Thiamine kinase) {Schizosaccharomyces pombe}; contains
           Pfam profile PF00293: NUDIX domain
          Length = 374

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -3

Query: 555 ALSPFRIDRALLNASKRPLSNSFIFSDFI 469
           +LSP R  RAL  A+  P+S+SF + D I
Sbjct: 38  SLSPLRHSRALSAATTVPISSSFTWDDVI 66


>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
            DNA Helicase [Arabidopsis thaliana] GI:11121449
          Length = 1188

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
 Frame = -1

Query: 353  ECKRFT----LGIKFDFCSSSARMKCGNITKKEKRMVLEVAVLVLIIHKLVDGFTQWLAS 186
            EC+RF     LG KFD  S++ +  C N    +  +  +V ++   + +LV    +  +S
Sbjct: 832  ECRRFLQLVHLGEKFD--STNCKKTCDNCCSSQSLIDKDVTLITRQLVELVKQTGERFSS 889

Query: 185  LHFLE 171
             H LE
Sbjct: 890  AHILE 894


>At5g62170.1 68418.m07804 expressed protein various predicted
           proteins, Arabidopsis thaliana
          Length = 703

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 382 WGV*IFLFSLSVKGSHSVSNSTSVLLPRG 296
           WGV +  +S +V GSH  S+S  + LPRG
Sbjct: 676 WGVHVTRYSTNV-GSHHDSSSLRLRLPRG 703


>At4g00520.1 68417.m00071 acyl-CoA thioesterase family protein
           contains Pfam profile: PF02551 acyl-CoA thioesterase
          Length = 283

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 416 ILHHKLFLYIAVGCMNIPFLFECKRFTLGIKFDFCSSSARMK 291
           I+H+    ++ VG +NIP +++  R   G  F   S  AR K
Sbjct: 30  IVHNFHCYFLLVGDINIPIIYDVNRLRDGNNFATRSVDARQK 71


>At3g25950.1 68416.m03234 hypothetical protein
          Length = 251

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 494 IVSFSLILFCSNYPINRLVIIGAFIFILHHKLFLYIAVGC 375
           ++ FS+  F  +     + +   FIFILHH   LY+   C
Sbjct: 87  VLDFSMAYFTVDLLHYLIFLPNDFIFILHHIATLYVFATC 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,151,289
Number of Sequences: 28952
Number of extensions: 291745
Number of successful extensions: 680
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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