BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11o08 (677 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g13240.1 68418.m01521 expressed protein prdeicted proteins, S... 38 0.005 At5g45470.1 68418.m05586 expressed protein contains Pfam domain,... 29 3.7 At5g19460.1 68418.m02319 MutT/nudix family protein similar to SP... 29 3.7 At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 28 6.5 At5g62170.1 68418.m07804 expressed protein various predicted pro... 27 8.6 At4g00520.1 68417.m00071 acyl-CoA thioesterase family protein co... 27 8.6 At3g25950.1 68416.m03234 hypothetical protein 27 8.6 >At5g13240.1 68418.m01521 expressed protein prdeicted proteins, Schizosaccharomyces pombe Length = 224 Score = 38.3 bits (85), Expect = 0.005 Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Frame = +2 Query: 485 MKLLESGRLEALSRALSILN-GDSAVQGRVESYSCKMAGSEK 607 MK LE L+ L+ L LN G+ ++G +E+YSCK AGS+K Sbjct: 1 MKFLEYTNLDRLNVFLGHLNLGERTIKGCLEAYSCKHAGSDK 42 >At5g45470.1 68418.m05586 expressed protein contains Pfam domain, PF04578: Protein of unknown function, DUF594 Length = 866 Score = 28.7 bits (61), Expect = 3.7 Identities = 16/50 (32%), Positives = 22/50 (44%) Frame = +1 Query: 259 ILFSFFVMFPHFIRAEEEQKSNLIPSVNLLHSKRKGIFIHPTAMYRNNLW 408 I F F PHFI++ + S + L K +F+H M R LW Sbjct: 558 IYFEFISRIPHFIKSVWDILSEFFDISDTLDMVHKTLFVHGEPMTR-ELW 606 >At5g19460.1 68418.m02319 MutT/nudix family protein similar to SP|P41888 Thiamine pyrophosphokinase (EC 2.7.6.2) (TPK) (Thiamine kinase) {Schizosaccharomyces pombe}; contains Pfam profile PF00293: NUDIX domain Length = 374 Score = 28.7 bits (61), Expect = 3.7 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = -3 Query: 555 ALSPFRIDRALLNASKRPLSNSFIFSDFI 469 +LSP R RAL A+ P+S+SF + D I Sbjct: 38 SLSPLRHSRALSAATTVPISSSFTWDDVI 66 >At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to DNA Helicase [Arabidopsis thaliana] GI:11121449 Length = 1188 Score = 27.9 bits (59), Expect = 6.5 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%) Frame = -1 Query: 353 ECKRFT----LGIKFDFCSSSARMKCGNITKKEKRMVLEVAVLVLIIHKLVDGFTQWLAS 186 EC+RF LG KFD S++ + C N + + +V ++ + +LV + +S Sbjct: 832 ECRRFLQLVHLGEKFD--STNCKKTCDNCCSSQSLIDKDVTLITRQLVELVKQTGERFSS 889 Query: 185 LHFLE 171 H LE Sbjct: 890 AHILE 894 >At5g62170.1 68418.m07804 expressed protein various predicted proteins, Arabidopsis thaliana Length = 703 Score = 27.5 bits (58), Expect = 8.6 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = -2 Query: 382 WGV*IFLFSLSVKGSHSVSNSTSVLLPRG 296 WGV + +S +V GSH S+S + LPRG Sbjct: 676 WGVHVTRYSTNV-GSHHDSSSLRLRLPRG 703 >At4g00520.1 68417.m00071 acyl-CoA thioesterase family protein contains Pfam profile: PF02551 acyl-CoA thioesterase Length = 283 Score = 27.5 bits (58), Expect = 8.6 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = -1 Query: 416 ILHHKLFLYIAVGCMNIPFLFECKRFTLGIKFDFCSSSARMK 291 I+H+ ++ VG +NIP +++ R G F S AR K Sbjct: 30 IVHNFHCYFLLVGDINIPIIYDVNRLRDGNNFATRSVDARQK 71 >At3g25950.1 68416.m03234 hypothetical protein Length = 251 Score = 27.5 bits (58), Expect = 8.6 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -1 Query: 494 IVSFSLILFCSNYPINRLVIIGAFIFILHHKLFLYIAVGC 375 ++ FS+ F + + + FIFILHH LY+ C Sbjct: 87 VLDFSMAYFTVDLLHYLIFLPNDFIFILHHIATLYVFATC 126 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,151,289 Number of Sequences: 28952 Number of extensions: 291745 Number of successful extensions: 680 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 665 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 680 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1428369392 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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