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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o06
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0778 - 5799260-5799273,5799377-5799447,5800163-5800578           39   0.004
06_01_0297 - 2162632-2162651,2162718-2162788,2162962-2163314           36   0.023
07_03_0436 - 18188221-18188373,18189121-18189233,18189817-181898...    33   0.16 
04_01_0060 - 607615-607706,608497-608531,609283-609360,610402-61...    33   0.22 
03_05_0868 + 28385066-28385478,28386050-28386167,28386365-283867...    33   0.22 
02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,362...    33   0.28 
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305...    31   0.66 
06_02_0211 - 13043968-13044646,13044752-13045037,13045903-130459...    31   0.87 
09_04_0430 + 17502387-17503505                                         29   4.6  
11_01_0404 + 3071412-3071464,3073572-3074970                           28   6.1  
03_05_0894 + 28571015-28571391,28571651-28571768,28572069-285723...    28   6.1  
02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580     28   6.1  
01_07_0109 - 41131714-41132988                                         28   6.1  
01_05_0322 + 20932151-20932470,20933076-20933146,20933259-20933266     28   6.1  

>02_01_0778 - 5799260-5799273,5799377-5799447,5800163-5800578
          Length = 166

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +3

Query: 552 NNASPGDWICKCGLYNFKRRQVCYRRTCNGKRSEGVV-YGGDGDRNG 689
           ++  PGDW C CG +NF  R  C++  C   + +  V  GG G  +G
Sbjct: 63  SDVRPGDWYCNCGAHNFASRSSCFK--CAAFKDDAAVNSGGAGAFDG 107



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +3

Query: 555 NASPGDWICK-CGLYNFKRRQVCYR-RTCNGKRSEGVVYGGD 674
           N  PGDW C+ C   NF RR +C R     G    G   GGD
Sbjct: 2   NRKPGDWDCRACQHLNFSRRDLCQRCGEPRGAADRGSGGGGD 43


>06_01_0297 - 2162632-2162651,2162718-2162788,2162962-2163314
          Length = 147

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 564 PGDWICKCGLYNFKRRQVCYR 626
           PGDW C CG +NF  R  C++
Sbjct: 55  PGDWYCNCGYHNFASRASCFK 75



 Score = 31.9 bits (69), Expect = 0.50
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +3

Query: 567 GDWICK---CGLYNFKRRQVCYRRTCNGKR 647
           GDWIC    C ++NF  R  CYR  CN  R
Sbjct: 112 GDWICTRPGCNVHNFASRIECYR--CNAPR 139



 Score = 31.5 bits (68), Expect = 0.66
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 564 PGDWICK-CGLYNFKRRQVCYRRTCNGKRSE 653
           PGDW CK C   NF RR  C R  C+  R +
Sbjct: 7   PGDWNCKSCQHLNFSRRDYCQR--CHTPRQD 35


>07_03_0436 -
           18188221-18188373,18189121-18189233,18189817-18189889,
           18189979-18190046,18190132-18190372,18191614-18191732,
           18192977-18193028,18193178-18193192
          Length = 277

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +3

Query: 567 GDWIC-KCGLYNFKRRQVCYRRTCNGKR 647
           GDW C +CG  NF  R VC R  C   R
Sbjct: 28  GDWTCPQCGNVNFSFRNVCNRGACGAPR 55


>04_01_0060 -
           607615-607706,608497-608531,609283-609360,610402-610550,
           610639-610730,611202-611280,611774-612150,613016-613226
          Length = 370

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 567 GDWICKCGLYNFKRRQVCYRRTCNGKRSEGV 659
           GDW+C CG +N+  R  C  + C+     G+
Sbjct: 180 GDWLCSCGFHNYSSRTQC--KQCSAPVPSGI 208


>03_05_0868 +
           28385066-28385478,28386050-28386167,28386365-28386726,
           28389308-28389406,28389485-28389890
          Length = 465

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +3

Query: 531 KHQDEVQNNASPGDWIC-KCGLYNFKRRQVCYRRTCNGKRSEGVVYGGD 674
           K ++  +     GDW+C KC   NF R ++C++  C   R +  +  G+
Sbjct: 280 KGRETTETEMKKGDWLCPKCHFMNFARNKMCFK--CEESRPKRQLIPGE 326



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 564 PGDWIC-KCGLYNFKRRQVCYRRTCNGKRSE 653
           PG+W C  C   NF+R +VC +    G  ++
Sbjct: 324 PGEWECPSCSFVNFRRNKVCLKCKHEGPEND 354


>02_01_0500 -
           3623837-3624019,3624591-3624778,3625209-3626147,
           3626311-3626479,3626701-3626871,3626948-3627016,
           3627094-3627201,3627844-3627997,3628659-3628738,
           3628822-3628914,3628951-3629073,3629165-3629915,
           3630123-3630163,3630338-3630385
          Length = 1038

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 558 ASPGDWICK-CGLYNFKRRQVCYR 626
           A+P DWIC  CG  NF RR  C++
Sbjct: 407 AAPCDWICTICGCMNFARRTSCFQ 430


>08_02_1291 +
           25930056-25930067,25930289-25930334,25930434-25930546,
           25930645-25930930,25931357-25931421,25931642-25931693,
           25931774-25931883,25932611-25932641,25932853-25933004,
           25934622-25934840
          Length = 361

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = +3

Query: 570 DWIC-KCGLYNFKRRQVCYRRTCNGKRSEGVVYGGDGDR 683
           DW C  C   NF  R VC  R CN  R E      DG R
Sbjct: 198 DWKCPNCNNINFAFRTVCNMRKCNTPRPENQGSKPDGAR 236


>06_02_0211 -
           13043968-13044646,13044752-13045037,13045903-13045979,
           13046039-13046139,13046348-13046412,13048296-13048581
          Length = 497

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +3

Query: 534 HQDEVQNNASPGDWICK---CGLYNFKRRQVCYRRTCNGKR 647
           H+++   +   GDWIC+   CG  NF RR  C    CN  R
Sbjct: 253 HRNDPNLSPREGDWICQNPNCGNLNFARRTHC--NNCNKYR 291


>09_04_0430 + 17502387-17503505
          Length = 372

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -2

Query: 290 ALRADVPRLPYRRPIAEFPFVGVPPRAALLSTSPR 186
           A RA  P  P ++P  + P    PPRAA L T PR
Sbjct: 153 AARAYHPPAPMQQPQPQPPPQPTPPRAAPLPTPPR 187


>11_01_0404 + 3071412-3071464,3073572-3074970
          Length = 483

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +1

Query: 178 LRCLGEVERSAARGGTPTNGNSAIGRLYGSLGTSALSAGRHP 303
           L+CLG+  R     G+   GN   G  YGSL    +S   HP
Sbjct: 39  LKCLGD--RFGEMEGSNPPGNMTQGPSYGSLDLHGISKQMHP 78


>03_05_0894 +
           28571015-28571391,28571651-28571768,28572069-28572376,
           28572452-28572583,28572672-28572770,28572950-28573487
          Length = 523

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
 Frame = +3

Query: 534 HQDEVQNNASPGDWICK-CGLYNFKRRQVC 620
           H+++       GDWICK C   NF +   C
Sbjct: 295 HENQEHLPLKKGDWICKRCNFLNFAKNTRC 324


>02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580
          Length = 726

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 594 IDHTCRSNHPVMRCSAPHPGACPFLFPYQT 505
           IDH C++   +     P P + PF  P+ T
Sbjct: 649 IDHLCKAKEIMQAAQIPSPTSLPFSSPFMT 678


>01_07_0109 - 41131714-41132988
          Length = 424

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -1

Query: 618 RPDVF*SCIDHTCRSNHPVMRCSAPHPGACPFLFPYQTCPSHDYRIDY 475
           RPDV+ + +D   R+     R + P P A PF   Y +      R+ Y
Sbjct: 284 RPDVYRAVVDAFARATAGRKRVTPPPPPAAPFELCYDSRDLGSTRLGY 331


>01_05_0322 + 20932151-20932470,20933076-20933146,20933259-20933266
          Length = 132

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +3

Query: 564 PGDWICK-CGLYNFKRRQVCYRRTCNGKRSEGVVYGGDG 677
           PGDW C+ C + N+  R  C++  C   +++       G
Sbjct: 51  PGDWCCRCCAVNNYASRGSCFK--CGAAKNDSAAAVAQG 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,838,121
Number of Sequences: 37544
Number of extensions: 298725
Number of successful extensions: 1054
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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