Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11o06
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0778 - 5799260-5799273,5799377-5799447,5800163-5800578 39 0.004
06_01_0297 - 2162632-2162651,2162718-2162788,2162962-2163314 36 0.023
07_03_0436 - 18188221-18188373,18189121-18189233,18189817-181898... 33 0.16
04_01_0060 - 607615-607706,608497-608531,609283-609360,610402-61... 33 0.22
03_05_0868 + 28385066-28385478,28386050-28386167,28386365-283867... 33 0.22
02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,362... 33 0.28
08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 31 0.66
06_02_0211 - 13043968-13044646,13044752-13045037,13045903-130459... 31 0.87
09_04_0430 + 17502387-17503505 29 4.6
11_01_0404 + 3071412-3071464,3073572-3074970 28 6.1
03_05_0894 + 28571015-28571391,28571651-28571768,28572069-285723... 28 6.1
02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580 28 6.1
01_07_0109 - 41131714-41132988 28 6.1
01_05_0322 + 20932151-20932470,20933076-20933146,20933259-20933266 28 6.1
>02_01_0778 - 5799260-5799273,5799377-5799447,5800163-5800578
Length = 166
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 552 NNASPGDWICKCGLYNFKRRQVCYRRTCNGKRSEGVV-YGGDGDRNG 689
++ PGDW C CG +NF R C++ C + + V GG G +G
Sbjct: 63 SDVRPGDWYCNCGAHNFASRSSCFK--CAAFKDDAAVNSGGAGAFDG 107
Score = 33.9 bits (74), Expect = 0.12
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +3
Query: 555 NASPGDWICK-CGLYNFKRRQVCYR-RTCNGKRSEGVVYGGD 674
N PGDW C+ C NF RR +C R G G GGD
Sbjct: 2 NRKPGDWDCRACQHLNFSRRDLCQRCGEPRGAADRGSGGGGD 43
>06_01_0297 - 2162632-2162651,2162718-2162788,2162962-2163314
Length = 147
Score = 36.3 bits (80), Expect = 0.023
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 564 PGDWICKCGLYNFKRRQVCYR 626
PGDW C CG +NF R C++
Sbjct: 55 PGDWYCNCGYHNFASRASCFK 75
Score = 31.9 bits (69), Expect = 0.50
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = +3
Query: 567 GDWICK---CGLYNFKRRQVCYRRTCNGKR 647
GDWIC C ++NF R CYR CN R
Sbjct: 112 GDWICTRPGCNVHNFASRIECYR--CNAPR 139
Score = 31.5 bits (68), Expect = 0.66
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 564 PGDWICK-CGLYNFKRRQVCYRRTCNGKRSE 653
PGDW CK C NF RR C R C+ R +
Sbjct: 7 PGDWNCKSCQHLNFSRRDYCQR--CHTPRQD 35
>07_03_0436 -
18188221-18188373,18189121-18189233,18189817-18189889,
18189979-18190046,18190132-18190372,18191614-18191732,
18192977-18193028,18193178-18193192
Length = 277
Score = 33.5 bits (73), Expect = 0.16
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +3
Query: 567 GDWIC-KCGLYNFKRRQVCYRRTCNGKR 647
GDW C +CG NF R VC R C R
Sbjct: 28 GDWTCPQCGNVNFSFRNVCNRGACGAPR 55
>04_01_0060 -
607615-607706,608497-608531,609283-609360,610402-610550,
610639-610730,611202-611280,611774-612150,613016-613226
Length = 370
Score = 33.1 bits (72), Expect = 0.22
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 567 GDWICKCGLYNFKRRQVCYRRTCNGKRSEGV 659
GDW+C CG +N+ R C + C+ G+
Sbjct: 180 GDWLCSCGFHNYSSRTQC--KQCSAPVPSGI 208
>03_05_0868 +
28385066-28385478,28386050-28386167,28386365-28386726,
28389308-28389406,28389485-28389890
Length = 465
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 531 KHQDEVQNNASPGDWIC-KCGLYNFKRRQVCYRRTCNGKRSEGVVYGGD 674
K ++ + GDW+C KC NF R ++C++ C R + + G+
Sbjct: 280 KGRETTETEMKKGDWLCPKCHFMNFARNKMCFK--CEESRPKRQLIPGE 326
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 564 PGDWIC-KCGLYNFKRRQVCYRRTCNGKRSE 653
PG+W C C NF+R +VC + G ++
Sbjct: 324 PGEWECPSCSFVNFRRNKVCLKCKHEGPEND 354
>02_01_0500 -
3623837-3624019,3624591-3624778,3625209-3626147,
3626311-3626479,3626701-3626871,3626948-3627016,
3627094-3627201,3627844-3627997,3628659-3628738,
3628822-3628914,3628951-3629073,3629165-3629915,
3630123-3630163,3630338-3630385
Length = 1038
Score = 32.7 bits (71), Expect = 0.28
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 558 ASPGDWICK-CGLYNFKRRQVCYR 626
A+P DWIC CG NF RR C++
Sbjct: 407 AAPCDWICTICGCMNFARRTSCFQ 430
>08_02_1291 +
25930056-25930067,25930289-25930334,25930434-25930546,
25930645-25930930,25931357-25931421,25931642-25931693,
25931774-25931883,25932611-25932641,25932853-25933004,
25934622-25934840
Length = 361
Score = 31.5 bits (68), Expect = 0.66
Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = +3
Query: 570 DWIC-KCGLYNFKRRQVCYRRTCNGKRSEGVVYGGDGDR 683
DW C C NF R VC R CN R E DG R
Sbjct: 198 DWKCPNCNNINFAFRTVCNMRKCNTPRPENQGSKPDGAR 236
>06_02_0211 -
13043968-13044646,13044752-13045037,13045903-13045979,
13046039-13046139,13046348-13046412,13048296-13048581
Length = 497
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +3
Query: 534 HQDEVQNNASPGDWICK---CGLYNFKRRQVCYRRTCNGKR 647
H+++ + GDWIC+ CG NF RR C CN R
Sbjct: 253 HRNDPNLSPREGDWICQNPNCGNLNFARRTHC--NNCNKYR 291
>09_04_0430 + 17502387-17503505
Length = 372
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -2
Query: 290 ALRADVPRLPYRRPIAEFPFVGVPPRAALLSTSPR 186
A RA P P ++P + P PPRAA L T PR
Sbjct: 153 AARAYHPPAPMQQPQPQPPPQPTPPRAAPLPTPPR 187
>11_01_0404 + 3071412-3071464,3073572-3074970
Length = 483
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 178 LRCLGEVERSAARGGTPTNGNSAIGRLYGSLGTSALSAGRHP 303
L+CLG+ R G+ GN G YGSL +S HP
Sbjct: 39 LKCLGD--RFGEMEGSNPPGNMTQGPSYGSLDLHGISKQMHP 78
>03_05_0894 +
28571015-28571391,28571651-28571768,28572069-28572376,
28572452-28572583,28572672-28572770,28572950-28573487
Length = 523
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +3
Query: 534 HQDEVQNNASPGDWICK-CGLYNFKRRQVC 620
H+++ GDWICK C NF + C
Sbjct: 295 HENQEHLPLKKGDWICKRCNFLNFAKNTRC 324
>02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580
Length = 726
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -1
Query: 594 IDHTCRSNHPVMRCSAPHPGACPFLFPYQT 505
IDH C++ + P P + PF P+ T
Sbjct: 649 IDHLCKAKEIMQAAQIPSPTSLPFSSPFMT 678
>01_07_0109 - 41131714-41132988
Length = 424
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -1
Query: 618 RPDVF*SCIDHTCRSNHPVMRCSAPHPGACPFLFPYQTCPSHDYRIDY 475
RPDV+ + +D R+ R + P P A PF Y + R+ Y
Sbjct: 284 RPDVYRAVVDAFARATAGRKRVTPPPPPAAPFELCYDSRDLGSTRLGY 331
>01_05_0322 + 20932151-20932470,20933076-20933146,20933259-20933266
Length = 132
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 564 PGDWICK-CGLYNFKRRQVCYRRTCNGKRSEGVVYGGDG 677
PGDW C+ C + N+ R C++ C +++ G
Sbjct: 51 PGDWCCRCCAVNNYASRGSCFK--CGAAKNDSAAAVAQG 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,838,121
Number of Sequences: 37544
Number of extensions: 298725
Number of successful extensions: 1054
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -