BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov11o06 (693 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_01_0778 - 5799260-5799273,5799377-5799447,5800163-5800578 39 0.004 06_01_0297 - 2162632-2162651,2162718-2162788,2162962-2163314 36 0.023 07_03_0436 - 18188221-18188373,18189121-18189233,18189817-181898... 33 0.16 04_01_0060 - 607615-607706,608497-608531,609283-609360,610402-61... 33 0.22 03_05_0868 + 28385066-28385478,28386050-28386167,28386365-283867... 33 0.22 02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,362... 33 0.28 08_02_1291 + 25930056-25930067,25930289-25930334,25930434-259305... 31 0.66 06_02_0211 - 13043968-13044646,13044752-13045037,13045903-130459... 31 0.87 09_04_0430 + 17502387-17503505 29 4.6 11_01_0404 + 3071412-3071464,3073572-3074970 28 6.1 03_05_0894 + 28571015-28571391,28571651-28571768,28572069-285723... 28 6.1 02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580 28 6.1 01_07_0109 - 41131714-41132988 28 6.1 01_05_0322 + 20932151-20932470,20933076-20933146,20933259-20933266 28 6.1 >02_01_0778 - 5799260-5799273,5799377-5799447,5800163-5800578 Length = 166 Score = 38.7 bits (86), Expect = 0.004 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Frame = +3 Query: 552 NNASPGDWICKCGLYNFKRRQVCYRRTCNGKRSEGVV-YGGDGDRNG 689 ++ PGDW C CG +NF R C++ C + + V GG G +G Sbjct: 63 SDVRPGDWYCNCGAHNFASRSSCFK--CAAFKDDAAVNSGGAGAFDG 107 Score = 33.9 bits (74), Expect = 0.12 Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Frame = +3 Query: 555 NASPGDWICK-CGLYNFKRRQVCYR-RTCNGKRSEGVVYGGD 674 N PGDW C+ C NF RR +C R G G GGD Sbjct: 2 NRKPGDWDCRACQHLNFSRRDLCQRCGEPRGAADRGSGGGGD 43 >06_01_0297 - 2162632-2162651,2162718-2162788,2162962-2163314 Length = 147 Score = 36.3 bits (80), Expect = 0.023 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +3 Query: 564 PGDWICKCGLYNFKRRQVCYR 626 PGDW C CG +NF R C++ Sbjct: 55 PGDWYCNCGYHNFASRASCFK 75 Score = 31.9 bits (69), Expect = 0.50 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 3/30 (10%) Frame = +3 Query: 567 GDWICK---CGLYNFKRRQVCYRRTCNGKR 647 GDWIC C ++NF R CYR CN R Sbjct: 112 GDWICTRPGCNVHNFASRIECYR--CNAPR 139 Score = 31.5 bits (68), Expect = 0.66 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%) Frame = +3 Query: 564 PGDWICK-CGLYNFKRRQVCYRRTCNGKRSE 653 PGDW CK C NF RR C R C+ R + Sbjct: 7 PGDWNCKSCQHLNFSRRDYCQR--CHTPRQD 35 >07_03_0436 - 18188221-18188373,18189121-18189233,18189817-18189889, 18189979-18190046,18190132-18190372,18191614-18191732, 18192977-18193028,18193178-18193192 Length = 277 Score = 33.5 bits (73), Expect = 0.16 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Frame = +3 Query: 567 GDWIC-KCGLYNFKRRQVCYRRTCNGKR 647 GDW C +CG NF R VC R C R Sbjct: 28 GDWTCPQCGNVNFSFRNVCNRGACGAPR 55 >04_01_0060 - 607615-607706,608497-608531,609283-609360,610402-610550, 610639-610730,611202-611280,611774-612150,613016-613226 Length = 370 Score = 33.1 bits (72), Expect = 0.22 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = +3 Query: 567 GDWICKCGLYNFKRRQVCYRRTCNGKRSEGV 659 GDW+C CG +N+ R C + C+ G+ Sbjct: 180 GDWLCSCGFHNYSSRTQC--KQCSAPVPSGI 208 >03_05_0868 + 28385066-28385478,28386050-28386167,28386365-28386726, 28389308-28389406,28389485-28389890 Length = 465 Score = 33.1 bits (72), Expect = 0.22 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = +3 Query: 531 KHQDEVQNNASPGDWIC-KCGLYNFKRRQVCYRRTCNGKRSEGVVYGGD 674 K ++ + GDW+C KC NF R ++C++ C R + + G+ Sbjct: 280 KGRETTETEMKKGDWLCPKCHFMNFARNKMCFK--CEESRPKRQLIPGE 326 Score = 29.9 bits (64), Expect = 2.0 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%) Frame = +3 Query: 564 PGDWIC-KCGLYNFKRRQVCYRRTCNGKRSE 653 PG+W C C NF+R +VC + G ++ Sbjct: 324 PGEWECPSCSFVNFRRNKVCLKCKHEGPEND 354 >02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147, 3626311-3626479,3626701-3626871,3626948-3627016, 3627094-3627201,3627844-3627997,3628659-3628738, 3628822-3628914,3628951-3629073,3629165-3629915, 3630123-3630163,3630338-3630385 Length = 1038 Score = 32.7 bits (71), Expect = 0.28 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%) Frame = +3 Query: 558 ASPGDWICK-CGLYNFKRRQVCYR 626 A+P DWIC CG NF RR C++ Sbjct: 407 AAPCDWICTICGCMNFARRTSCFQ 430 >08_02_1291 + 25930056-25930067,25930289-25930334,25930434-25930546, 25930645-25930930,25931357-25931421,25931642-25931693, 25931774-25931883,25932611-25932641,25932853-25933004, 25934622-25934840 Length = 361 Score = 31.5 bits (68), Expect = 0.66 Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 1/39 (2%) Frame = +3 Query: 570 DWIC-KCGLYNFKRRQVCYRRTCNGKRSEGVVYGGDGDR 683 DW C C NF R VC R CN R E DG R Sbjct: 198 DWKCPNCNNINFAFRTVCNMRKCNTPRPENQGSKPDGAR 236 >06_02_0211 - 13043968-13044646,13044752-13045037,13045903-13045979, 13046039-13046139,13046348-13046412,13048296-13048581 Length = 497 Score = 31.1 bits (67), Expect = 0.87 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%) Frame = +3 Query: 534 HQDEVQNNASPGDWICK---CGLYNFKRRQVCYRRTCNGKR 647 H+++ + GDWIC+ CG NF RR C CN R Sbjct: 253 HRNDPNLSPREGDWICQNPNCGNLNFARRTHC--NNCNKYR 291 >09_04_0430 + 17502387-17503505 Length = 372 Score = 28.7 bits (61), Expect = 4.6 Identities = 16/35 (45%), Positives = 19/35 (54%) Frame = -2 Query: 290 ALRADVPRLPYRRPIAEFPFVGVPPRAALLSTSPR 186 A RA P P ++P + P PPRAA L T PR Sbjct: 153 AARAYHPPAPMQQPQPQPPPQPTPPRAAPLPTPPR 187 >11_01_0404 + 3071412-3071464,3073572-3074970 Length = 483 Score = 28.3 bits (60), Expect = 6.1 Identities = 16/42 (38%), Positives = 20/42 (47%) Frame = +1 Query: 178 LRCLGEVERSAARGGTPTNGNSAIGRLYGSLGTSALSAGRHP 303 L+CLG+ R G+ GN G YGSL +S HP Sbjct: 39 LKCLGD--RFGEMEGSNPPGNMTQGPSYGSLDLHGISKQMHP 78 >03_05_0894 + 28571015-28571391,28571651-28571768,28572069-28572376, 28572452-28572583,28572672-28572770,28572950-28573487 Length = 523 Score = 28.3 bits (60), Expect = 6.1 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%) Frame = +3 Query: 534 HQDEVQNNASPGDWICK-CGLYNFKRRQVC 620 H+++ GDWICK C NF + C Sbjct: 295 HENQEHLPLKKGDWICKRCNFLNFAKNTRC 324 >02_03_0076 - 14861337-14861974,14862008-14862119,14862150-14863580 Length = 726 Score = 28.3 bits (60), Expect = 6.1 Identities = 10/30 (33%), Positives = 15/30 (50%) Frame = -1 Query: 594 IDHTCRSNHPVMRCSAPHPGACPFLFPYQT 505 IDH C++ + P P + PF P+ T Sbjct: 649 IDHLCKAKEIMQAAQIPSPTSLPFSSPFMT 678 >01_07_0109 - 41131714-41132988 Length = 424 Score = 28.3 bits (60), Expect = 6.1 Identities = 15/48 (31%), Positives = 22/48 (45%) Frame = -1 Query: 618 RPDVF*SCIDHTCRSNHPVMRCSAPHPGACPFLFPYQTCPSHDYRIDY 475 RPDV+ + +D R+ R + P P A PF Y + R+ Y Sbjct: 284 RPDVYRAVVDAFARATAGRKRVTPPPPPAAPFELCYDSRDLGSTRLGY 331 >01_05_0322 + 20932151-20932470,20933076-20933146,20933259-20933266 Length = 132 Score = 28.3 bits (60), Expect = 6.1 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Frame = +3 Query: 564 PGDWICK-CGLYNFKRRQVCYRRTCNGKRSEGVVYGGDG 677 PGDW C+ C + N+ R C++ C +++ G Sbjct: 51 PGDWCCRCCAVNNYASRGSCFK--CGAAKNDSAAAVAQG 87 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,838,121 Number of Sequences: 37544 Number of extensions: 298725 Number of successful extensions: 1054 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 988 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1053 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1768474200 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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