Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o03
         (427 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2637| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.92 
SB_9077| Best HMM Match : Leu_leader (HMM E-Value=9.6)                 27   4.9  
SB_55996| Best HMM Match : DUF1694 (HMM E-Value=6.9)                   27   6.5  

>SB_2637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 235 NKSFCQKVLQRKLCKGGFM*YFNVCFNSENVNIVL 339
           N  FC+K  +R   KG    Y NVC   + V +V+
Sbjct: 177 NAYFCEKCNKRMTLKGNINQYNNVCLKKDLVQVVI 211


>SB_9077| Best HMM Match : Leu_leader (HMM E-Value=9.6)
          Length = 231

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 148 CMGLFYSLITFTSTSSMCGHRYKHPKQLLNKSFCQKVLQRKLCK 279
           C  L+YS  T     ++C     H  Q +N S C K L  K+ K
Sbjct: 19  CTRLYYSRCTRALLITVCKGSIAHDAQKVNYSRCAKALLLKVRK 62


>SB_55996| Best HMM Match : DUF1694 (HMM E-Value=6.9)
          Length = 167

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 182 QVLQVCAATDTSIQSSC*TRAFVRRFFRENYVKEDLCNILMFVLIVKM 325
           +VL      D SI        F+RRF+R ++ K     ++ F LIV M
Sbjct: 27  RVLNSTTRNDESICRITIENCFLRRFYRPSHEKHHFFYVIPFRLIVFM 74


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,397,766
Number of Sequences: 59808
Number of extensions: 219405
Number of successful extensions: 551
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)