Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11o01
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0233 - 21135743-21135867,21135970-21136340,21136486-211367... 54 1e-07
07_03_1546 + 27602598-27602917,27602995-27603052,27603130-276032... 32 0.33
06_01_0458 + 3269069-3269081,3269113-3269741 30 1.3
01_05_0029 + 17345520-17345765,17345883-17346638 30 1.3
12_02_0778 + 23074463-23076411,23076859-23077072,23077824-230778... 29 2.4
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689... 29 3.1
10_01_0152 - 1754113-1754286,1754396-1754551,1755273-1756194,175... 28 5.4
03_02_0701 - 10523053-10523220,10523802-10523916,10524102-105241... 28 5.4
01_05_0451 - 22361617-22361811,22362728-22362842,22363443-223635... 28 5.4
04_04_0746 + 27726736-27727118,27727518-27727544,27728042-277281... 28 7.2
03_05_0780 + 27646936-27647084,27647168-27647289,27649380-276494... 28 7.2
03_05_0229 - 22142255-22142344,22142471-22142527,22142621-221427... 28 7.2
12_01_0411 + 3276679-3276687,3277430-3277493,3278256-3278297,327... 27 9.5
09_04_0472 - 17895285-17896459,17897113-17897271,17897374-178977... 27 9.5
08_01_0180 - 1524302-1524877,1525998-1527056 27 9.5
>02_04_0233 -
21135743-21135867,21135970-21136340,21136486-21136757,
21137289-21137397,21137846-21138247,21138376-21138419,
21138539-21138759,21140163-21140274,21140620-21140754
Length = 596
Score = 53.6 bits (123), Expect = 1e-07
Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 15/174 (8%)
Frame = +3
Query: 84 MFAKPYKLKSNNTLKNSEKKQLAQRIIHEFPTITEEKVKQLVPAKSIGICMKLVLSSGDI 263
MF K +K+ L ++KK+L + FP ++ + ++P K V +
Sbjct: 1 MFKKHVDVKALQRLSGADKKKLRRTAKERFPQASDADLDAILPPK----VEVTVAKYPNR 56
Query: 264 VNVYVIDG-VPIIMEV---AEGLVPT----------VCALWQAPEMVPHIIIH-TPVFPK 398
V VY I+G P++ ++ L PT V ALW+ P+++P + V
Sbjct: 57 VLVYGIEGEFPMLFDIDGRGHELFPTEHSLTGENIAVYALWKVPDLLPAFTLKGGEVSRF 116
Query: 399 VQGGAPLYLPGVELPAGGTGFPQFCKGELIAAHTSNNSATVIVGRAILSSGDML 560
+ GGA L PG+ +P G P F G+ + N A + VG +SS + L
Sbjct: 117 ILGGADLMFPGISIPP--EGLPSFQPGQPWSVKVPGNPAPIAVGATTMSSNEAL 168
>07_03_1546 + 27602598-27602917,27602995-27603052,27603130-27603252,
27603896-27603992,27604095-27604131,27604244-27604349,
27604547-27604604,27604705-27604802,27604911-27605030,
27605622-27605667,27606336-27606522,27606747-27607263,
27607361-27607453,27608101-27608286,27608364-27608574,
27609263-27609387,27609518-27609664,27610114-27610236,
27610445-27610799,27611076-27611305,27611785-27611877
Length = 1109
Score = 32.3 bits (70), Expect = 0.33
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Frame = -3
Query: 487 INSPLQNCGKPVPPAGSSTPGRYRGAPPWTF--GKTGVCIMICGTISGACQSAHTVGTNP 314
+ S L P +G STP Y+G PP T+ + T A SA GT P
Sbjct: 878 LGSQLYAGANPPYTSGQSTP--YQGVPPTTYHQPRPPTQFQTVPTAPPAVSSATVPGTTP 935
Query: 313 SATSIIIGTPSITYTFTMSPEDNTNFMQMP 224
S + G + T P +N F+Q P
Sbjct: 936 S--QMFPGPVANNPTSRFMPSNNPGFVQRP 963
>06_01_0458 + 3269069-3269081,3269113-3269741
Length = 213
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +3
Query: 393 PKVQGGAPLYLPGVELPAGGTGFPQFCKGELIAAHTSNNSATVIVGRAILSSGDMLLRTA 572
P V GG ++L TG P+ G+ +S+ +++ RA++ SG +L
Sbjct: 90 PTVFGGVVIFL--TPWRRRSTGHPRLAGGDFHLTASSSARVIILLTRAVVESGHTILHLV 147
Query: 573 GVC 581
+C
Sbjct: 148 EIC 150
>01_05_0029 + 17345520-17345765,17345883-17346638
Length = 333
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 351 PEMVPHIIIHTPVFPKVQGGAPLYLPGVELPAGGTG-FPQFCKGELIAAHTSNNSATVIV 527
P +VP + + PK +GG+ Y V LPAGG G + K + A +S + T+ V
Sbjct: 231 PFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELAKENVKNASSSTGNITLSV 290
Query: 528 GRAILSSGDML 560
++ +G+++
Sbjct: 291 TKSKPETGEVI 301
>12_02_0778 +
23074463-23076411,23076859-23077072,23077824-23077887,
23077930-23078008,23078181-23078303,23078805-23078919
Length = 847
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Frame = -3
Query: 592 SVSMHTPAVLSSMSP----LERIARPTITVAELLLVCAAINSPLQNCGKPVPPAGSSTPG 425
+ S H P+ ++ S L A+P A AA+ P G PPA G
Sbjct: 15 AASHHHPSAAAAASAASARLHASAQPASAAASASAAAAALCPPFPAAGAACPPAQGPIFG 74
Query: 424 RYRGAPPW 401
GA PW
Sbjct: 75 GGPGAKPW 82
>09_02_0286 -
6898041-6898144,6898881-6899005,6899158-6899207,
6899245-6899386,6899951-6900020,6900077-6900216,
6900291-6900365,6901083-6904723
Length = 1448
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 466 CGKPVPPAGSSTP--GRYRGAPPWTFGKTGVCIMI 368
CG P+PP G + P GR RG+P G I++
Sbjct: 799 CGIPLPPCGHNPPWGGRPRGSPDGKRKVIGASILV 833
>10_01_0152 -
1754113-1754286,1754396-1754551,1755273-1756194,
1756364-1756414,1757540-1757946,1758918-1759067,
1759178-1759333,1760175-1761041
Length = 960
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Frame = -3
Query: 415 GAPPWTFGKTGVCIMICGTISGACQSAHTV-GTNPSATSIIIGTPSITYTFTMSPEDNTN 239
G P W C + IS T+ T S+ I TPS+TY P D+
Sbjct: 186 GCPAWESLFLDECAVNDVEISSQTLKVLTIKNTLFSSDKTTISTPSVTYLKLWRPVDSCV 245
Query: 238 FMQMPI 221
F MP+
Sbjct: 246 FNDMPL 251
>03_02_0701 -
10523053-10523220,10523802-10523916,10524102-10524172,
10524263-10524420,10524497-10524590,10524678-10524766,
10525322-10525419,10525492-10525625,10525714-10525797,
10525903-10526151
Length = 419
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 387 VFPKVQGGAPLYLPGVELPAGGTGFPQFC 473
+FP GG P +L V LP+G + FC
Sbjct: 74 LFPSKAGGIPAWLDPVNLPSGNSRCCGFC 102
>01_05_0451 -
22361617-22361811,22362728-22362842,22363443-22363513,
22363600-22363754,22363843-22363933,22364049-22364104,
22364910-22365027,22365087-22365200,22365289-22365504
Length = 376
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 390 FPKVQGGAPLYLPGVELPAGGTGFPQFC 473
FP GG P +L V LP+G + FC
Sbjct: 64 FPNKAGGVPAWLDPVNLPSGKSRCCDFC 91
>04_04_0746 +
27726736-27727118,27727518-27727544,27728042-27728126,
27729252-27729809
Length = 350
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -3
Query: 496 CAAINSPLQNCGKPVPPAGSSTPGRYRGAPPWTFGKTGVCIMICGTISG 350
C +P P PP +TP + P T K G C + G ISG
Sbjct: 27 CGKCPTPPPPALPPPPPPTPTTPSYHNKCPVNTL-KFGACADVLGAISG 74
>03_05_0780 +
27646936-27647084,27647168-27647289,27649380-27649458,
27650346-27650427,27650483-27650600,27650695-27651050,
27651404-27652222,27652846-27653265,27653426-27653437
Length = 718
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Frame = -3
Query: 496 CAAINSPLQNCG--KPVPPAGSSTPGRYRGAP 407
C+ PL CG P PPAG + R P
Sbjct: 334 CSTTTQPLPTCGTPAPAPPAGQPSSAEDRATP 365
>03_05_0229 -
22142255-22142344,22142471-22142527,22142621-22142705,
22143552-22143677,22143750-22143793,22143877-22143999,
22144078-22144216,22148795-22151292
Length = 1053
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +3
Query: 498 TSNNSATVIVGR---AILSSGDMLLRTAGVCMETLHVFGDHLSKDIK 629
TSN ++VI L+ DML TAGV L + +HL D K
Sbjct: 303 TSNEWSSVIEAANEWLALAESDMLTTTAGVASVALQMSYEHLQPDTK 349
>12_01_0411 +
3276679-3276687,3277430-3277493,3278256-3278297,
3279047-3279063,3280011-3281258
Length = 459
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 457 PVPPAGSSTPGRYRGAPPWTFGKTGVC 377
P P G STP +GA W +T +C
Sbjct: 277 PPYPIGKSTPVHVKGAIYWMVSRTSLC 303
>09_04_0472 -
17895285-17896459,17897113-17897271,17897374-17897794,
17898520-17898552,17898902-17899384
Length = 756
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = -3
Query: 535 ARPTITV--AELLLVCAAINSPLQNCGK-PVPPAGSSTPG 425
+RP + + + LLL+C A+++P G P P A S PG
Sbjct: 3 SRPPLLLQYSSLLLLCLAVSAPPAAAGNVPAPVAAVSKPG 42
>08_01_0180 - 1524302-1524877,1525998-1527056
Length = 544
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 369 IIIHTPVFPKVQGGAPLYLPGVELPAGGTGFPQFCKGEL 485
+ +H P+F ++Q G L GV++P + FP F + +L
Sbjct: 92 VAVHDPIFYELQFGLVDPLTGVDIPF--SSFPHFAEHKL 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,952,499
Number of Sequences: 37544
Number of extensions: 411700
Number of successful extensions: 1282
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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