Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o01
         (639 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34658| Best HMM Match : SUI1 (HMM E-Value=1e-06)                    60   1e-09
SB_31961| Best HMM Match : EGF (HMM E-Value=0)                         32   0.45 
SB_2635| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.0  
SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)                   30   1.4  
SB_44405| Best HMM Match : Extensin_2 (HMM E-Value=4.5)                30   1.8  
SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)          29   2.4  
SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37)                  29   3.2  
SB_40146| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-08)                 29   3.2  
SB_31409| Best HMM Match : Drf_FH1 (HMM E-Value=1.3)                   29   4.2  
SB_17974| Best HMM Match : PAN (HMM E-Value=0.004)                     27   9.7  
SB_49651| Best HMM Match : EGF_CA (HMM E-Value=1.6e-18)                27   9.7  
SB_9034| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.7  
SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)                    27   9.7  

>SB_34658| Best HMM Match : SUI1 (HMM E-Value=1e-06)
          Length = 798

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 26/83 (31%), Positives = 49/83 (59%)
 Frame = +3

Query: 84  MFAKPYKLKSNNTLKNSEKKQLAQRIIHEFPTITEEKVKQLVPAKSIGICMKLVLSSGDI 263
           MF KP+++K++  ++ S++++L   I   FP +  E + ++VP K      ++V  S + 
Sbjct: 1   MFIKPFRVKTSTAIRGSDRRKLRSEIGRCFPALPAELLSEIVPNKEDMTVSRIVTHSEES 60

Query: 264 VNVYVIDGVPIIMEVAEGLVPTV 332
           V VY + G PI  E+ + ++PTV
Sbjct: 61  VTVYSLSGEPIFFEIEKRVIPTV 83


>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2813

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 276 VIDGVPIIMEVAEGLVPTVCALWQA-PEMVPHIIIHTPVFPKVQGGAPLYLPGV 434
           ++  VP I+     +VP V  +  A PE+VP +    PV P+V+   P  +P V
Sbjct: 37  ILPAVPEIVPAVPEVVPAVPEIVPAVPEVVPAVPEVVPVVPEVEPAVPEVVPAV 90



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 276 VIDGVPIIMEVAEGLVPTVCALWQA-PEMVPHIIIHTPVFPKVQGGAPLYLPGV 434
           V+  VP I+     +VP V  +  A PE+VP +    P  P+V    P  +P V
Sbjct: 86  VVPAVPEIVPAVPEVVPAVPEVVPAVPEVVPAVPEIVPAVPEVVPAVPEIVPAV 139



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 276 VIDGVPIIMEVAEGLVPTVCALWQA-PEMVPHIIIHTPVFPKVQGGAPLYLPGV 434
           V+  VP I+     +VP V  +  A PE+VP +    P  P++    P  +P V
Sbjct: 114 VVPAVPEIVPAVPEVVPAVPEIVPAVPEIVPAVPEIVPAVPEIVPAVPEVVPAV 167



 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 276 VIDGVPIIMEVAEGLVPTVCALWQA-PEMVPHIIIHTPVFPKVQGGAPLYLPGV 434
           V+  VP ++     +VP V  +  A PE+VP +    P  P++    P  +P V
Sbjct: 100 VVPAVPEVVPAVPEVVPAVPEIVPAVPEVVPAVPEIVPAVPEIVPAVPEIVPAV 153



 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 276 VIDGVPIIMEVAEGLVPTVCALWQA-PEMVPHIIIHTPVFPKVQGGAPLYLPGV 434
           V+  VP ++     +VP V  +  A PE+VP +    P  P++    P  +P V
Sbjct: 107 VVPAVPEVVPAVPEIVPAVPEVVPAVPEIVPAVPEIVPAVPEIVPAVPEIVPAV 160



 Score = 28.3 bits (60), Expect = 5.6
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
 Frame = +3

Query: 195 VKQLVPA--KSIGICMKLVLSSGDIVNVYVIDGVPIIMEVAEGLVPTVCALWQAPEMVPH 368
           V ++VPA  + +    ++V +  ++V   V + VP++ EV E  VP V      PE+VP 
Sbjct: 41  VPEIVPAVPEVVPAVPEIVPAVPEVVPA-VPEVVPVVPEV-EPAVPEVVPA--VPEIVPA 96

Query: 369 IIIHTPVFPKVQGGAPLYLPGV 434
           +    P  P+V    P  +P V
Sbjct: 97  VPEVVPAVPEVVPAVPEVVPAV 118



 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 276 VIDGVPIIMEVAEGLVPTVCALWQA-PEMVPHIIIHTPVFPKVQGGAPLYLPGV 434
           ++  VP ++     +VP V  +  A PE+VP +    P  P++    P  +P V
Sbjct: 93  IVPAVPEVVPAVPEVVPAVPEVVPAVPEIVPAVPEVVPAVPEIVPAVPEIVPAV 146


>SB_2635| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 639  VYQILYLCLNDPQIHEVSPCILQQFSVAC 553
            V +++ L   DPQ+ E   CI QQF+++C
Sbjct: 1055 VQKLVMLLPTDPQVQEALDCIGQQFTLSC 1083


>SB_19504| Best HMM Match : FH2 (HMM E-Value=1.2e-30)
          Length = 739

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -3

Query: 517 VAELLLVCAAINSPLQNCGKPVPPAGSSTPGRYRGAPP 404
           ++ L    AA N P    G P PP     PG   GAPP
Sbjct: 175 ISNLSSAMAAANKPSPMAGMPPPPPPPPPPGFPGGAPP 212


>SB_44405| Best HMM Match : Extensin_2 (HMM E-Value=4.5)
          Length = 325

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 311 CYFHYNWH-PVYHVHIYNVSRGQHQFHANAYR 219
           C++HY+ H P YH H Y     +H  H N Y+
Sbjct: 293 CHYHYHHHHPPYHYH-YPPLPYRHHHHHNRYQ 323


>SB_27885| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.051)
          Length = 421

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 484 NSPLQNCGKPVPPAGSSTPGRYRGAPP 404
           N PL N   P P   +  PG Y GAPP
Sbjct: 221 NHPLTNYPAPPPQGYAPPPGGYPGAPP 247


>SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37)
          Length = 1063

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 24/108 (22%), Positives = 52/108 (48%), Gaps = 1/108 (0%)
 Frame = +3

Query: 123 LKNSEKKQLAQRIIHEFPTITEEKVKQLVPAKSIGICMKLVLSSGDIVNVYVIDGVPIIM 302
           +K+     +   ++    ++   +++Q V   S+G  + L LS G  V + +  G P+++
Sbjct: 96  IKHMGTSAIMDLVLRLITSVESPQLRQEVLEVSVGFPVLLDLSGGIPVLLDLSVGHPVLL 155

Query: 303 EVAEGLVPTVCALWQAPEMVPHIIIHTPVFPKVQGGAPLYLP-GVELP 443
           EV+  L P +  +     +   + +  PV  ++  G+P+ L   V+LP
Sbjct: 156 EVSVDL-PVLLEVNVGLHVSLEVTVGLPVSLELSVGSPVLLDVSVKLP 202


>SB_40146| Best HMM Match : 7tm_1 (HMM E-Value=4.7e-08)
          Length = 306

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/61 (22%), Positives = 27/61 (44%)
 Frame = +3

Query: 231 CMKLVLSSGDIVNVYVIDGVPIIMEVAEGLVPTVCALWQAPEMVPHIIIHTPVFPKVQGG 410
           C  ++LS   +   Y ++   + ++ +   +  V   W+ P+    +  H PV   VQG 
Sbjct: 218 CYWVILSFDFLFYNYYVEMTLLYLQFSNSCINIVVYAWRIPQFKQLLFRHKPVVANVQGR 277

Query: 411 A 413
           A
Sbjct: 278 A 278


>SB_31409| Best HMM Match : Drf_FH1 (HMM E-Value=1.3)
          Length = 391

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 285 GVPIIMEVAEGLVPTVCALWQAPEMVPHIIIHTPVFPKVQGGAPLYL 425
           G P++  +  G  P V +L     +VP +    PV P + GG P+YL
Sbjct: 345 GEPVVPTL-NGEDPVVPSLNSKDPVVPSLNGKDPVVPSLNGGDPVYL 390


>SB_17974| Best HMM Match : PAN (HMM E-Value=0.004)
          Length = 318

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
 Frame = -3

Query: 523 ITVAELLLVCAAINSPLQNCGKPVP-------PAGSSTPGRYRGAP 407
           +T   +   CA++NSP Q   +  P       P G+S P + RG P
Sbjct: 141 MTALTITRACASLNSPAQTARQEGPYRSMIQEPQGTSFPSQQRGLP 186


>SB_49651| Best HMM Match : EGF_CA (HMM E-Value=1.6e-18)
          Length = 342

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
 Frame = +3

Query: 294 IIMEVAEGLVP----TVCALWQAPEMVPHI 371
           I+M V   L P    TV A+W  PEM  HI
Sbjct: 111 IVMHVQTALTPRDPSTVRAMWDIPEMASHI 140


>SB_9034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1756

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 298 IIGTPSITYTFTMSPEDNTNFMQMPIDLAGTSCFTFSSVIV 176
           I  T S   TFT+S +    F  +P ++AGT      +V+V
Sbjct: 548 IANTSSGNITFTLSTQGTQRFTCVPENVAGTGAIATVTVLV 588


>SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)
          Length = 1719

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -3

Query: 148 NCFFSEFFNVLLDFNLYGFANISIFR*EIKLRNICE 41
           NC+ S+FF  L+  +      + ++R + K++N+C+
Sbjct: 606 NCWISKFFEQLMKKHSQTITFVLVWRSDPKMKNLCK 641


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,861,868
Number of Sequences: 59808
Number of extensions: 489572
Number of successful extensions: 1406
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)