Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11o01
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    28   0.088
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    27   0.15 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    27   0.20 
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    24   1.4  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    23   1.9  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.5  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   3.3  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   3.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   3.3  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   3.3  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   3.3  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   7.6  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   7.6  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   7.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.6  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 27.9 bits (59), Expect = 0.088
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 481 SPLQNCGKPVPPAGSSTPGRYRGAPPWTFGKTGVCIMICGTISGA 347
           SPL   G P+    S+   R++   P+T+G  GV ++    ++GA
Sbjct: 535 SPLSLLGGPLVMVCSAPVWRFQPWGPFTWGGIGVVVLFAVVLAGA 579



 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 405 GGAPLYLPGVELPAGG 452
           G   L+ PG ELPA G
Sbjct: 59  GANALFTPGQELPARG 74


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = -3

Query: 505 LLVCAAINSPLQNCGKPVPPAGSSTPGRYRGAPPWTFGKTGVCIMICGTISGA 347
           LLV   I+ P + CG P       TP     A  WT  +  +C    G +S A
Sbjct: 126 LLVSLRIDLPWRTCGNPWNTRYCLTPTERLEALCWTQDEDVICSTPIGNLSHA 178


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = -3

Query: 505 LLVCAAINSPLQNCGKPVPPAGSSTPGRYRGAPPWTFGKTGVCIMICGTISGA 347
           LLV   I+ P + CG P       TP     A  WT  +  +C    G +S A
Sbjct: 179 LLVSLRIDLPWRTCGNPWNTRYCLTPTERLEALCWTQDEDIICSTPIGNLSHA 231


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 537 ILSSGDMLLRTAGVCMETLHVFGDHLSKDIK 629
           +L SG ++ RT  VC   LHVF    S  +K
Sbjct: 138 VLDSG-LVNRTVPVCAPKLHVFDLKTSNHLK 167


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 492 AHTSNNSATVIVGRAILSSGDMLL 563
           ++TSN S TVI+   + SS D+ L
Sbjct: 91  SNTSNTSKTVILSNKLESSDDISL 114


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 492 AHTSNNSATVIVGRAILSSGDMLL 563
           ++TSN S T+I+   + SS D+ L
Sbjct: 91  SNTSNTSKTIILSNKLESSDDISL 114


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 492 AHTSNNSATVIVGRAILSSGDMLL 563
           ++TSN S TVI+   + SS D+ L
Sbjct: 91  SNTSNTSKTVILSDKLESSDDISL 114


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 492 AHTSNNSATVIVGRAILSSGDMLL 563
           ++TSN S TVI+   + SS D+ L
Sbjct: 91  SNTSNTSKTVILSDKLESSDDISL 114


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 492 AHTSNNSATVIVGRAILSSGDMLL 563
           ++TSN S TVI+   + SS D+ L
Sbjct: 91  SNTSNTSKTVILSDKLESSDDISL 114


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 498 TSNNSATVIVGRAILSSGDMLL 563
           TSN S TVI+   + SS D+ L
Sbjct: 93  TSNTSKTVILSNKLESSDDISL 114


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 492 AHTSNNSATVIVGRAILSSGDMLL 563
           ++TSN S TVI+   + SS D+ L
Sbjct: 91  SNTSNTSKTVILSDKLESSDDISL 114


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 352 GACQSAHTVGTNPSATSIIIGTPSITY 272
           G C++  T  ++P+A  I  GT    Y
Sbjct: 112 GGCRNFSTCSSHPTAAFISYGTLFFIY 138


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -3

Query: 352 GACQSAHTVGTNPSATSIIIGTPSITY 272
           G C++  T  ++P+A  I  GT    Y
Sbjct: 111 GGCRNFSTCSSHPTAAFISYGTLFFIY 137


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 492 AHTSNNSATVIVGRAILSSGDMLL 563
           ++TSN S TVI+   + SS D+ L
Sbjct: 91  SNTSNISKTVILSDKLESSDDISL 114


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 463 GKPVPPAGSSTPGRYRGAPP 404
           G P  P+    PG   GAPP
Sbjct: 37  GSPPNPSQGPPPGGPPGAPP 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,834
Number of Sequences: 438
Number of extensions: 4571
Number of successful extensions: 18
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)