Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11o01
(639 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g71350.1 68414.m08235 eukaryotic translation initiation facto... 81 8e-16
At1g09150.1 68414.m01020 pseudouridine synthase and archaeosine ... 51 6e-07
At3g20015.1 68416.m02532 aspartyl protease family protein contai... 30 1.1
At5g66570.1 68418.m08392 oxygen-evolving enhancer protein 1-1, c... 29 2.6
At5g57450.2 68418.m07178 DNA repair family protein contains simi... 29 2.6
At5g57450.1 68418.m07177 DNA repair family protein contains simi... 29 2.6
At4g19710.2 68417.m02895 bifunctional aspartate kinase/homoserin... 28 6.0
At4g19710.1 68417.m02894 bifunctional aspartate kinase/homoserin... 28 6.0
At4g02220.1 68417.m00300 zinc finger (MYND type) family protein ... 28 6.0
At3g48340.1 68416.m05276 cysteine proteinase, putative similar t... 28 6.0
At3g24150.1 68416.m03032 expressed protein 28 6.0
At2g03470.2 68415.m00306 myb family transcription factor / ELM2 ... 28 6.0
At2g03470.1 68415.m00305 myb family transcription factor / ELM2 ... 28 6.0
At1g29010.1 68414.m03548 expressed protein ; expression supporte... 28 6.0
At4g16670.1 68417.m02518 expressed protein 27 7.9
>At1g71350.1 68414.m08235 eukaryotic translation initiation factor
SUI1 family protein weak similarity to SP|P41214 Ligatin
(Hepatocellular carcinoma-associated antigen 56) {Homo
sapiens}; contains Pfam profile PF01253: Translation
initiation factor SUI1
Length = 597
Score = 80.6 bits (190), Expect = 8e-16
Identities = 56/178 (31%), Positives = 94/178 (52%), Gaps = 6/178 (3%)
Frame = +3
Query: 84 MFAKPYKLKSNNTLKNSEKKQLAQRIIHEFPTITEEKVKQLVPAKSIGICMKLVLSS-GD 260
MF K + KS+ L +++K+L + + + P +T+E + ++P K +++ LS +
Sbjct: 1 MFKKAVEAKSHQRLSGADRKKLRRTVRNRLPLLTDELLDAILPPK-----VEITLSKFQN 55
Query: 261 IVNVYVIDG-VPIIMEV---AEGLVPTVCALWQAPEMVPHIIIH-TPVFPKVQGGAPLYL 425
V VY I+G P+ ++ + PTV ALW+APEM+P ++ V + GGA L
Sbjct: 56 RVIVYSIEGGCPMFFDIDGRGTEIFPTVFALWEAPEMLPSFMLKGGEVSRYIIGGADLMF 115
Query: 426 PGVELPAGGTGFPQFCKGELIAAHTSNNSATVIVGRAILSSGDMLLRTAGVCMETLHV 599
PG+ +P G+P F GE+ A N A + VG +SS + R AG+ + L +
Sbjct: 116 PGILIPP--QGYPSFSAGEIWAVKVPGNLAPIAVGCTTMSSEE--ARKAGLRGKALRI 169
>At1g09150.1 68414.m01020 pseudouridine synthase and archaeosine
transglycosylase (PUA) domain-containing protein similar
to MCT-1 (putative oncogene) [Homo sapiens] GI:6177738;
contains Pfam profile PF01472: PUA domain
Length = 181
Score = 51.2 bits (117), Expect = 6e-07
Identities = 40/174 (22%), Positives = 82/174 (47%), Gaps = 1/174 (0%)
Frame = +3
Query: 102 KLKSNNTLKNSEKKQLAQRIIHEFPTITEEKVKQLVPAKSIGICMKLVLSSGDIVNVYVI 281
++ S N +K S ++++ Q I E+P + E ++ L+P K I + +V+ + + + V+
Sbjct: 9 EISSQNQVKASVQRRIRQSIQDEYPGL-ESVMEDLLP-KKIPL---IVVKCPNHLTLVVV 63
Query: 282 DGVPIIMEVAEG-LVPTVCALWQAPEMVPHIIIHTPVFPKVQGGAPLYLPGVELPAGGTG 458
+ VP+ + +G +PT+ L Q P ++ + V GA + PG+ P GG
Sbjct: 64 NNVPLFFCIRDGPYMPTLRLLHQYPNIMKRFQVDRGAIKFVLSGANIMCPGLTSP-GGVL 122
Query: 459 FPQFCKGELIAAHTSNNSATVIVGRAILSSGDMLLRTAGVCMETLHVFGDHLSK 620
+ +A + + +G +S+ D+ G+ ++ +H D L K
Sbjct: 123 DQEVEAERPVAIYAEGKQHALAIGFTKMSAKDIKSINKGIGVDNMHYLNDGLWK 176
>At3g20015.1 68416.m02532 aspartyl protease family protein contains
Pfam domain, PF00026: eukaryotic aspartyl protease
Length = 386
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = -3
Query: 301 IIIGTPSITYTFTMSPE---DNTNFMQMPIDLAGTSCFTFSSVIVGNS 167
+ + P++++ FT P NF+ MP+D +GT CF F++ G S
Sbjct: 312 VSVRVPTVSFYFTEGPVLTLPARNFL-MPVDDSGTYCFAFAASPTGLS 358
>At5g66570.1 68418.m08392 oxygen-evolving enhancer protein 1-1,
chloroplast / 33 kDa subunit of oxygen evolving system
of photosystem II (PSBO1) (PSBO) identical to SP:P23321
Oxygen-evolving enhancer protein 1-1, chloroplast
precursor (OEE1) (33 kDa subunit of oxygen evolving
system of photosystem II) (OEC 33 kDa subunit) (33 kDa
thylakoid membrane protein) [Arabidopsis thaliana]
Length = 332
Score = 29.1 bits (62), Expect = 2.6
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +3
Query: 393 PKVQGGAPLYLPGVELPAGGTGFPQFCKGELIAAHTSNNSATV 521
PK +GG+ Y V LPAGG G + EL+ + N +A+V
Sbjct: 244 PKGRGGSTGYDNAVALPAGGRGDEE----ELVKENVKNTAASV 282
>At5g57450.2 68418.m07178 DNA repair family protein contains
similarity to Swiss-Prot:O43542 DNA-repair protein XRCC3
(X-ray repair cross-complementing protein 3) [Homo
sapiens]
Length = 304
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -2
Query: 356 FRSLPERAH--RRDQPFCYFHYNWHPVYHVHIYNVSRGQHQF 237
FR L + +H + P Y +YN +P HV + NV H F
Sbjct: 87 FRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHLF 128
>At5g57450.1 68418.m07177 DNA repair family protein contains
similarity to Swiss-Prot:O43542 DNA-repair protein XRCC3
(X-ray repair cross-complementing protein 3) [Homo
sapiens]
Length = 304
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -2
Query: 356 FRSLPERAH--RRDQPFCYFHYNWHPVYHVHIYNVSRGQHQF 237
FR L + +H + P Y +YN +P HV + NV H F
Sbjct: 87 FRRLHQLSHTFHQSNPSIYANYNDNPCDHVFVQNVHSVDHLF 128
>At4g19710.2 68417.m02895 bifunctional aspartate kinase/homoserine
dehydrogenase, putative / AK-HSDH, putative similar to
gb|X71364 [PIR|S46497] aspartate kinase / homoserine
dehydrogenase from Arabidopsis thaliana
Length = 916
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 531 RAILSSGDMLLRTAGVCMETLHVFGDHLSKDIKFGK 638
R +L +GD +LR G+C TL ++ D F +
Sbjct: 714 RGLLETGDKILRIEGICSGTLSYLFNNFVGDRSFSE 749
>At4g19710.1 68417.m02894 bifunctional aspartate kinase/homoserine
dehydrogenase, putative / AK-HSDH, putative similar to
gb|X71364 [PIR|S46497] aspartate kinase / homoserine
dehydrogenase from Arabidopsis thaliana
Length = 859
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 531 RAILSSGDMLLRTAGVCMETLHVFGDHLSKDIKFGK 638
R +L +GD +LR G+C TL ++ D F +
Sbjct: 714 RGLLETGDKILRIEGICSGTLSYLFNNFVGDRSFSE 749
>At4g02220.1 68417.m00300 zinc finger (MYND type) family protein /
programmed cell death 2 C-terminal domain-containing
protein similar to SP|Q16342 Programmed cell death
protein 2 (Zinc finger protein Rp-8) {Homo sapiens};
contains Pfam profiles PF01753: MYND finger, PF04194:
Programmed cell death protein 2, C-terminal putative
domain
Length = 418
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 387 VFPKVQGGAPLYLPGVELPAGGTGFPQFCK 476
+FP + GG P +L V LP+G + C+
Sbjct: 70 LFPNLAGGVPAWLDPVNLPSGKSILCDLCE 99
>At3g48340.1 68416.m05276 cysteine proteinase, putative similar to
cysteine endopeptidase precursor [Ricinus communis]
GI:2944446; contains Pfam profile PF00112: Papain family
cysteine protease
Length = 351
Score = 27.9 bits (59), Expect = 6.0
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = -2
Query: 371 DMWDHFRSLPERAHRRDQPFCYFHYNWHPVYHVHIYNVSRGQHQFHANAY 222
D W S+P + R++ F F +N V HVH N ++ N +
Sbjct: 39 DRWRSHHSVPRSLNEREKRFNVFRHN---VMHVHNTNKKNRSYKLKLNKF 85
>At3g24150.1 68416.m03032 expressed protein
Length = 343
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 263 CKCVRDRRGANYNGSSRRVGPDGVRALASS*NGPTYHYTY 382
C VR R ++ +GP +++S N P+YH+ Y
Sbjct: 117 CIAVRASRSQRHSSGRTYLGPKIQEPVSASTNEPSYHHEY 156
>At2g03470.2 68415.m00306 myb family transcription factor / ELM2
domain-containing protein contains Pfam profile: PF00249
Myb-like DNA-binding domain; contains Pfam profile:
PF01448 ELM2 domain
Length = 449
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 512 CHSYCWSSYSFQRRHATENCWSMHGD 589
CH SYSF + T +CW+ + D
Sbjct: 396 CHRSGEDSYSFDDQRFTSDCWNKNND 421
>At2g03470.1 68415.m00305 myb family transcription factor / ELM2
domain-containing protein contains Pfam profile: PF00249
Myb-like DNA-binding domain; contains Pfam profile:
PF01448 ELM2 domain
Length = 450
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 512 CHSYCWSSYSFQRRHATENCWSMHGD 589
CH SYSF + T +CW+ + D
Sbjct: 397 CHRSGEDSYSFDDQRFTSDCWNKNND 422
>At1g29010.1 68414.m03548 expressed protein ; expression supported
by MPSS
Length = 220
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 315 GLVPTVCALWQAPEMVPHIIIHTPVFPKVQGGAPLYLPGVELPAGGT-GFPQF 470
GLV + + A +I PVF + + YLP + LP G+ GF QF
Sbjct: 82 GLVYPFSSYFSAGSFPSDLIPPAPVFQRKHDSSLHYLPPMNLPKQGSGGFYQF 134
>At4g16670.1 68417.m02518 expressed protein
Length = 429
Score = 27.5 bits (58), Expect = 7.9
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +1
Query: 328 RCARSGKLLKWSHISLYIHRSFQ 396
+C R+G +L+W H+ +YI++ Q
Sbjct: 310 QCTRNG-VLRWKHVKVYINKKSQ 331
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,662,242
Number of Sequences: 28952
Number of extensions: 329944
Number of successful extensions: 935
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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