Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11n24
(551 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0805 - 27839576-27839667,27839763-27839823,27840082-278401... 229 8e-61
04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227 103 9e-23
11_05_0016 - 18410889-18411104,18411326-18411381,18412883-184130... 55 3e-08
01_05_0667 + 24142121-24142319,24142742-24142864,24144522-24144739 49 3e-06
03_02_0081 - 5506194-5506197,5506310-5507170,5507299-5507456,550... 38 0.007
04_04_0166 - 23250473-23250746,23251349-23252025 35 0.050
03_06_0062 + 31384440-31384619,31384788-31384957,31385143-31385992 33 0.15
02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467 33 0.15
06_03_0946 - 26208253-26209075,26209181-26209329,26209525-26209812 31 0.81
07_01_0119 - 908600-909592,909685-909885 30 1.4
12_02_0870 - 23852923-23853228,23853416-23853728,23853813-238539... 29 1.9
01_06_0534 + 30057933-30058290,30058472-30059454 28 4.3
01_05_0758 + 24954701-24954793,24954907-24955086,24955676-249558... 28 4.3
03_01_0366 - 2848449-2849032,2849155-2849233,2849346-2849608,284... 28 5.7
01_01_0485 - 3576989-3577173,3577476-3577795,3577895-3578178,357... 28 5.7
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 27 7.5
03_04_0167 + 17936598-17936763,17938735-17938831,17938919-179390... 27 10.0
>03_05_0805 -
27839576-27839667,27839763-27839823,27840082-27840151,
27841167-27841299,27841928-27842018,27842097-27842174
Length = 174
Score = 229 bits (561), Expect = 8e-61
Identities = 103/173 (59%), Positives = 133/173 (76%), Gaps = 1/173 (0%)
Frame = +3
Query: 3 TTLRPFTCEDMLRFNNVNLDPLTETYGLSFYTQYLAHWPEYFQVVESPSGEIMGYIMGKA 182
TT+R F C+D+LRF++VNLD LTET+ +SFY Y+A WP+YF SP +MGYIMGK
Sbjct: 2 TTIRRFCCDDLLRFSSVNLDHLTETFNMSFYMTYMARWPDYFHAAVSPGDRVMGYIMGKV 61
Query: 183 EGHGENWHGHVTALTVSPDYRRLGLAATLMNLLEEVSEK-KKAYFVDLFVRVSNKVAINM 359
EG GE+WHGHVTA++V+ ++RR LA LMNLLEE+S+K KAYFVDLFVR SN AI M
Sbjct: 62 EGQGESWHGHVTAVSVATEFRRQKLAKKLMNLLEEISDKMDKAYFVDLFVRASNMPAIRM 121
Query: 360 YKNLGYIVYRTVLEYYSGDPDEDAYDMRKACSRDINKQSVIPLSHPVRTEDVD 518
Y+ LGY+VYR VL YYSG +ED DMRKA S+D+ K+S+IPL P+ ++++
Sbjct: 122 YEKLGYVVYRRVLRYYSG--EEDGLDMRKALSQDVEKKSIIPLKRPITPDELE 172
>04_04_1283 - 32373774-32373821,32373834-32373958,32375717-32376227
Length = 227
Score = 103 bits (247), Expect = 9e-23
Identities = 57/149 (38%), Positives = 83/149 (55%), Gaps = 3/149 (2%)
Frame = +3
Query: 9 LRPFTCEDMLRFNNVNLDPLTETYGLSFYTQYLAHWPEYFQVVESPSGEIMGYIMGK-AE 185
+R T +D+L NL L E Y + +Y ++ WP+ V E G I+GY++ K E
Sbjct: 4 IRQATIDDLLAMQACNLMCLPENYQMKYYLYHMLSWPQLLFVAEDYGGRIVGYVLAKMEE 63
Query: 186 GHGENWHGHVTALTVSPDYRRLGLAATLMNLLEEVSEKK-KAYFVDLFVRVSNKVAINMY 362
E HGH+T+L V +R+LGLA LM+ + ++ A +V L VR SN+ A N+Y
Sbjct: 64 DPSEPCHGHITSLAVLRSHRKLGLATKLMSAAQAAMDQVFGAEYVSLHVRRSNRAAFNLY 123
Query: 363 -KNLGYIVYRTVLEYYSGDPDEDAYDMRK 446
LGY ++ +YY+ EDAYDMRK
Sbjct: 124 TSTLGYQIHDVEAKYYA--DGEDAYDMRK 150
>11_05_0016 -
18410889-18411104,18411326-18411381,18412883-18413009,
18413113-18413307
Length = 197
Score = 55.2 bits (127), Expect = 3e-08
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Frame = +3
Query: 60 DPLTETYGLSFYTQYLAHWPEY-FQVVESPSGEIMGYIMGKAEGHGENWHGHVTALTVSP 236
+ L+E Y + Y ++ WP+ F + G+ +G ++ K H + G++ L V
Sbjct: 41 EELSEPYSIFTYRYFVYLWPQLTFLAFDPKDGKCVGTVVCKMGEHRGAFRGYIAMLVVLK 100
Query: 237 DYRRLGLAATLMNLLEEVSEKKKAYFVDLFVRVSNKVAINMYKNLGYIVYRTVLEYYSGD 416
YR G+A L+ V + V L V+NK A+ +Y LG+I + + YY
Sbjct: 101 PYRGRGIATELVTRSIRVMMESGCEEVTLEAEVTNKGALALYGRLGFIRAKRLYRYYLNG 160
Query: 417 PD 422
D
Sbjct: 161 VD 162
>01_05_0667 + 24142121-24142319,24142742-24142864,24144522-24144739
Length = 179
Score = 48.8 bits (111), Expect = 3e-06
Identities = 25/88 (28%), Positives = 45/88 (51%)
Frame = +3
Query: 210 HVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVDLFVRVSNKVAINMYKNLGYIVYR 389
++ L V YR LG+ + L+N + ++ EK+ + L V+ +N AI YK G+ + +
Sbjct: 92 YIMTLGVLAPYRSLGIGSKLLNHVIDLCEKQNIPEIYLHVQTNNDDAIAFYKKFGFEITK 151
Query: 390 TVLEYYSGDPDEDAYDMRKACSRDINKQ 473
T+ +YY D Y + K + K+
Sbjct: 152 TIEKYYKNITPPDCYVLTKFIGQAATKK 179
>03_02_0081 -
5506194-5506197,5506310-5507170,5507299-5507456,
5507549-5507740
Length = 404
Score = 37.5 bits (83), Expect = 0.007
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +3
Query: 207 GHVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVDLFVRVSNKVAINMYK-NLGYIV 383
G++ L V+P +RR+GLA ++ +E E+ A + + SN+ ++ ++ GY
Sbjct: 105 GYILGLRVAPSHRRMGLALRMVRRMEAWFERMGAEYAYMATDKSNEASLRLFTVRCGYSK 164
Query: 384 YRT 392
+RT
Sbjct: 165 FRT 167
>04_04_0166 - 23250473-23250746,23251349-23252025
Length = 316
Score = 34.7 bits (76), Expect = 0.050
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 210 HVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAY-FVDLFVRVSNKVAINMYKNLGYIVY 386
++ +TV RR G+ L+ E++ K A V L R+ ++V NMY+ GY +
Sbjct: 214 YICNMTVKTSLRRRGIGKQLLKACEDLIIKMDAKRHVYLHCRIIDQVPFNMYRKAGYNIV 273
Query: 387 RT 392
+T
Sbjct: 274 QT 275
>03_06_0062 + 31384440-31384619,31384788-31384957,31385143-31385992
Length = 399
Score = 33.1 bits (72), Expect = 0.15
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 210 HVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVDLFVRVSNKVAINMYK-NLGYIVY 386
++ L VSP YRR G+ L+ +EE + A + + N+ ++ ++ GY +
Sbjct: 106 YILGLRVSPRYRRKGVGKKLVGRMEEWFRQSGAEYSYMATEQDNEASVRLFTGRCGYSKF 165
Query: 387 RT 392
RT
Sbjct: 166 RT 167
>02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467
Length = 421
Score = 33.1 bits (72), Expect = 0.15
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 222 LTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVDLFVRVSNKVAINMYK-NLGYIVYR 389
L VSP +RRLG+A L+ EE + A + + SN ++ +++ Y ++R
Sbjct: 127 LRVSPSHRRLGIATELVRRAEEWCAARGAAYATMATTASNAASLALFQGRFKYALFR 183
>06_03_0946 - 26208253-26209075,26209181-26209329,26209525-26209812
Length = 419
Score = 30.7 bits (66), Expect = 0.81
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 210 HVTALTVSPDYRRLGLAATLMNLLEEVSEKKKAYFVDLFVRVSNKVAINMYK-NLGYIVY 386
++ L VSP +RRLG+ L+ EE + A + SN ++ ++ GY +
Sbjct: 135 NLLGLRVSPSHRRLGIGTALVRRAEEWCVARGAEHATMATTESNAASLALFTGRFGYAPF 194
Query: 387 R 389
R
Sbjct: 195 R 195
>07_01_0119 - 908600-909592,909685-909885
Length = 397
Score = 29.9 bits (64), Expect = 1.4
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Frame = +3
Query: 111 HWPEYFQVVESPSG-----EIMGYIMGKAE----GHGENWH--GHVTALTVSPDYRRLGL 257
H P Y +V G EI+G + G + G + + ++ L VSP +RR G+
Sbjct: 60 HSPAYLMLVAEAVGGPLGTEIVGVVRGCVKTVACGRSQLFSKVAYLLGLRVSPRHRRRGI 119
Query: 258 AATLMNLLEEVSEKKKAYFVDLFVRVSNKVAINMYKN-LGYIVYRT 392
L+ +EE + A + + N+ ++ ++ GY +RT
Sbjct: 120 GRRLVERMEEWFREMGAEYAYVATDRDNEPSVRLFTGACGYAKFRT 165
>12_02_0870 - 23852923-23853228,23853416-23853728,23853813-23853938,
23854038-23854243,23854311-23854443,23854607-23854688,
23854785-23854914,23855034-23855126,23855211-23855333,
23855786-23855977,23858230-23858394,23858697-23858768,
23858826-23858945,23859873-23859949,23860032-23860398,
23860738-23861871
Length = 1212
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 54 NLDPLTETYGLSFYTQYLAHWPEYFQVVESPSGEIMGYIMGKAEGHGENWHG 209
++D + LS+ YL+ W ++ Q +E P + Y++G H +W G
Sbjct: 925 SIDMVIHIGDLSYANGYLSQWDQFTQQIE-PIASTVPYMIGSG-NHERDWPG 974
>01_06_0534 + 30057933-30058290,30058472-30059454
Length = 446
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +3
Query: 297 KKKAYFVDLFVRVSNKVAINMYKNLGYIVYRTVLEYYSGDPDEDAYDMRKACSRDINKQS 476
K+ YF D R+ + + YK+ Y + + Y GD D Y++ A S +N
Sbjct: 326 KRLKYFTDRHFRLLGEHPRDSYKSNRGRTYIWMHKNYYGDGDAATYNLYHANSAGLNNLP 385
Query: 477 VIPLS 491
+I +S
Sbjct: 386 MIRMS 390
>01_05_0758 +
24954701-24954793,24954907-24955086,24955676-24955870,
24955982-24956089,24956211-24956288,24956383-24956464,
24956624-24956783,24956877-24957179,24957295-24957513,
24957598-24958057,24958175-24958240,24958332-24958511
Length = 707
Score = 28.3 bits (60), Expect = 4.3
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 360 YKNLGYIVYRTVLEYYSGDPDEDAYDMRKACSRDINKQSVIPLS-HPVRTEDVD 518
Y+N GY ++ + E Y G + + K C R+ KQ V + R DV+
Sbjct: 272 YRNQGYQLFVSFFEIYGGKLFDLLNERSKLCMREDGKQKVCIVGLQEYRVSDVE 325
>03_01_0366 -
2848449-2849032,2849155-2849233,2849346-2849608,
2849742-2849862
Length = 348
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +3
Query: 78 YGLSFYTQYLAHWPEYFQVVESPSGEIMGYIMGKAEGHGENWHGH 212
+G Y Q P Y+Q +G+ +GY A G G +H H
Sbjct: 264 HGYFAYPQQQGPPPSYYQYYGGGNGDGVGYANPNAGGAGGYYHPH 308
>01_01_0485 -
3576989-3577173,3577476-3577795,3577895-3578178,
3579780-3580095,3580441-3580859
Length = 507
Score = 27.9 bits (59), Expect = 5.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 111 HWPEYFQVVESPSGEIMGYIMGKAEGH 191
+WP+Y + + S +IM + + K+ GH
Sbjct: 308 YWPQYTPITKRASHDIMLFTVSKSTGH 334
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 76 HMAYRFTRNIWHIGQNIFKLWNH 144
H+ Y+F RN IG+ I ++WNH
Sbjct: 550 HIIYQFERN-GAIGECIIRVWNH 571
>03_04_0167 +
17936598-17936763,17938735-17938831,17938919-17939027,
17939125-17939163,17939655-17939768,17939886-17939947,
17940691-17940793,17942111-17942260,17942693-17942761,
17942840-17942896,17942966-17943226,17946154-17946222,
17946374-17946475,17947200-17947270,17947375-17947578,
17947848-17947941,17948350-17948646
Length = 687
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 165 YIMGKAEGHGENWHGHVTALTVSPDYRRLGLAATLMN 275
Y+M K ++ HG V + + P + R G+ T+MN
Sbjct: 485 YLMLKGNSTPKDGHGAVDNMKIIPAHDRQGMFKTIMN 521
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,740,816
Number of Sequences: 37544
Number of extensions: 240166
Number of successful extensions: 614
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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