Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11n23
(601 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 35 0.010
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 32 0.056
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 31 0.097
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 28 0.91
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 1.6
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 26 3.7
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 26 3.7
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 26 4.8
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa... 26 4.8
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 25 6.4
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 25 6.4
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.4
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 25 6.4
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 25 8.5
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 25 8.5
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 25 8.5
SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ... 25 8.5
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 34.7 bits (76), Expect = 0.010
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +2
Query: 227 DESWHPAEIIQSRYSTAESCYEYYVHYVGYDRRLDEWVS 343
D + AEI+ + T Y YVHY Y++RLDEW++
Sbjct: 32 DGEYRKAEILMIQKRTRGVVY--YVHYNDYNKRLDEWIT 68
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 32.3 bits (70), Expect = 0.056
Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Frame = +2
Query: 293 YYVHYVGYDRRLDEWVSRHRVMSDRFDVCEQSNNNINCDHLLTDKSGRKITRNQKRKHDE 472
Y +HY G+ DEWV + R++ + + N K K + + KHD
Sbjct: 36 YLIHYKGWKNSWDEWVEQDRILQWTEENLKTQKELKNAAISTRQKPTSKKSASSTSKHDS 95
Query: 473 INHVQKTYAEMDPTTAALEKE-HEAITKVK 559
+ +T ++ + HE +++K
Sbjct: 96 TGVKTSGKRSRESSTVTVDGDSHELPSRIK 125
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 31.5 bits (68), Expect = 0.097
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Frame = +2
Query: 146 RSTDNEDSESVPEQPLDIGEHYLV------RRSDESWHPAEIIQSRYSTAESCYEYYVHY 307
+++ ++D S PL+ G Y+ + SDE + I+ SR S ++YY+ +
Sbjct: 140 KTSGSDDHNSQSPVPLNEGFEYIASSGSEDKNSDEEFAVEMILDSRMKKDGSGFQYYLKW 199
Query: 308 VGYD 319
GYD
Sbjct: 200 EGYD 203
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 28.3 bits (60), Expect = 0.91
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -2
Query: 195 SKGCSGTDSESSLSVLRHSGLGNSLFTIGFSNSLS 91
SKG T +E + ++S L N++ IG SNSLS
Sbjct: 413 SKGLQFTSNELTNPTAKYSQLPNNIANIGESNSLS 447
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 27.5 bits (58), Expect = 1.6
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +2
Query: 413 LLTDKSGRKITRNQKRKHDEINHVQKTYAEMDPTTAALEKEHEAITKVKYIDRIQIGKYE 592
LL DK ++R+ + K EI H + E P + LE E K + +IQ+ K E
Sbjct: 720 LLKDKY-TVVSRSVEDKKKEIGHYESLIKEKQPHLSELEMELRNFVKSRDELQIQVEKVE 778
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 198 MSKGCSGTDSESSLSVLRHSGLGNSLFTIGFSNSLSPF 85
MS GT + S+LR NSL IG S ++ PF
Sbjct: 381 MSLDIIGTSTILDKSLLRWDWYSNSLAAIGVSQTVFPF 418
>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 333
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 374 VCEQSNNNINCDHL--LTDKSGRKITRNQKRKHDEINHVQKTYAEMDPTTAAL 526
V +Q+ + IN + LTD + + KR+ DE++ + ++ PT L
Sbjct: 262 VLQQALHEINIEFRSRLTDSERKALEEEDKREKDELDGYMRPVSQATPTNTDL 314
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -2
Query: 201 PMSKGCSGTDSESSLSVLRHSGLGNSLFTIGFSNSLSPFAIIMPTTTMVSRN 46
P+SK +G+ S S +S GF N LSP + + ++++S N
Sbjct: 238 PISKSNAGSSSPPRSEESFVSMDSSSSIVEGFENDLSPSQVTLNESSIISSN 289
>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 589
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = -2
Query: 441 IFRPDLSVSRWSQFMLLFDCSHTSNLSDITRWRDTHSSSLLSYPT 307
I R +++ + WS+ M CSH N + + + D+ + L + T
Sbjct: 389 IIRNEVAYAGWSEVMPFILCSHDENYAWLRKTDDSKAVQLANPKT 433
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +2
Query: 29 EAHCAVLRDTIVVVGIIMAKGDKELEKPIVNNE--LPNPE 142
E HC + +V + A GD + KP+ NE LP+PE
Sbjct: 534 EIHCCPDQQRQMVSYMKQAFGDTLVMKPVTANESVLPSPE 573
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 6.4
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 326 LDEWVSRHRVMSDRFDVCE 382
+ +W SR+ MSD+F++ E
Sbjct: 173 MGDWPSRYITMSDKFEIAE 191
>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 104 EKPIVNNELPNPECRSTDNEDSESVPEQPLDIGEHYLVRRSDE 232
+K +N+E + +TD E +ES +Q + E Y SDE
Sbjct: 156 DKQTINSEYADDVSDNTDEERTESKGQQESNSAEEYDDDDSDE 198
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 25.4 bits (53), Expect = 6.4
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +2
Query: 338 VSRHRVMSD-RFDVCEQSNNNINCDHLLTDKSGRKITRNQKRKHDEINHVQKTYAEMDPT 514
+ R R+ SD FD+ E + +H L G ++R Q +K N +QK + + D
Sbjct: 354 LKRGRLTSDSNFDIEELEKDE---EHDLRRSLGVLLSRLQSKKLFISNEIQKQWHKKDDF 410
Query: 515 TAALEKEHEAI 547
T + HE I
Sbjct: 411 TEYEDIVHELI 421
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -1
Query: 520 GGRWIHFGVSFL 485
G RW+HFGVS +
Sbjct: 18 GDRWLHFGVSHM 29
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 107 KPIVNNELPNPECRSTDNEDSESVPEQP 190
K +N E PN + T E SES EQP
Sbjct: 53 KEDINMEDPNVKTDETKVETSESTSEQP 80
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 260 SRYSTAESCYEYYVHYVGYDRRLDEWVSRHRVMSD 364
SRY + +EY V Y + EWVS + +D
Sbjct: 322 SRYKLLKVIHEYDVVITTYQILVSEWVSHNTTGTD 356
>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 437
Score = 25.0 bits (52), Expect = 8.5
Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 6/124 (4%)
Frame = +2
Query: 230 ESWHPAEII-QSRYSTAESCYEYYVHYVG---YDRR-LDEWVSRHRVMSDRFDVCEQSNN 394
E++ P II Q ++ C+E + G +D+ ++E + M+ D+ E + +
Sbjct: 141 EAFQPPPIIPQKPLASTPQCHEIQGYMPGRLEFDQEYMNEAELPIKDMNFDDDLHESAKH 200
Query: 395 NINCDHLLTDKSGRKITRNQKRKHDEINHVQKTYAEMDPTTAALEK-EHEAITKVKYIDR 571
+ + + ++TR RK NH Y + + K E + K K R
Sbjct: 201 EMQLKLTMLNIYNSRLTRRAVRKQTIFNHNLLDYRRLQANEKRMSKEERNLLNKTKAFAR 260
Query: 572 IQIG 583
+ G
Sbjct: 261 LLTG 264
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,423
Number of Sequences: 5004
Number of extensions: 50529
Number of successful extensions: 237
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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