Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11n23
(601 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1343 - 25905475-25905678,25907025-25907167,25907273-259073... 101 4e-22
08_02_0907 - 22485714-22486859,22487836-22487882,22488456-224888... 33 0.13
02_01_0161 - 1123890-1124210,1124599-1124673,1124841-1124903,112... 32 0.31
02_05_0248 + 27145459-27145551,27145824-27145952,27146030-271466... 31 0.70
12_01_0650 + 5500662-5501206,5502485-5502563,5503100-5503308,550... 30 1.6
03_02_0849 - 11768191-11771412 29 2.2
02_01_0758 + 5623953-5624171,5624251-5624430,5624533-5624591,562... 29 3.8
02_01_0107 + 785993-786359,786773-787703,787807-787975,788472-78... 29 3.8
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281 28 5.0
04_01_0451 + 5845249-5846133,5846220-5846509,5855590-5856060,585... 28 5.0
03_02_0144 + 5910246-5910734 28 5.0
10_02_0154 - 5923251-5923604,5924167-5925567,5925639-5925986 28 6.6
02_02_0433 - 10178497-10178844,10180394-10180444,10181201-101812... 28 6.6
01_06_0159 + 27089006-27089064,27089925-27090007,27090414-270905... 28 6.6
12_02_0223 + 15868889-15869182 27 8.7
11_01_0222 + 1740828-1740830,1741109-1741218,1741304-1741487,174... 27 8.7
03_02_0507 - 8999902-9000649,9001106-9001225,9001314-9001394,900... 27 8.7
01_06_0355 + 28657833-28660665,28660762-28661126 27 8.7
>07_03_1343 -
25905475-25905678,25907025-25907167,25907273-25907366,
25907526-25907687,25907884-25907952,25908631-25908843,
25909054-25909113,25909294-25909382,25909745-25910063
Length = 450
Score = 101 bits (242), Expect = 4e-22
Identities = 58/142 (40%), Positives = 85/142 (59%), Gaps = 4/142 (2%)
Frame = +2
Query: 188 PLDIGEHYLVRRSDESWHPAEIIQSRYSTAESC---YEYYVHYVGYDRRLDEWVSRHRVM 358
PL++G + R D+ HP ++I+ R S+ S YEYYVHY ++RRLDEWV
Sbjct: 62 PLEVGTRVMCRWRDQKLHPVKVIERRKSSTSSSPADYEYYVHYTEFNRRLDEWV------ 115
Query: 359 SDRFDVCEQSNNNINCDHLLTDK-SGRKITRNQKRKHDEINHVQKTYAEMDPTTAALEKE 535
+ + + + D + DK + K+TR+QKRK DE HV++ + E+D AA +E
Sbjct: 116 --KLEQLDLETVETDVDEKVEDKATSLKMTRHQKRKIDE-THVEQGHEELD---AASLRE 169
Query: 536 HEAITKVKYIDRIQIGKYEIDT 601
HE TKVK I +I++G+YEIDT
Sbjct: 170 HEEFTKVKNIAKIELGRYEIDT 191
>08_02_0907 -
22485714-22486859,22487836-22487882,22488456-22488830,
22489339-22489500,22490325-22490439
Length = 614
Score = 33.5 bits (73), Expect = 0.13
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -2
Query: 189 GCSGTDSESSLSVLRHSGLGNSLFTIGFSNSLSPFAIIMPT-TTMVSRNTAQCA 31
G S + + + V + GN I FSN+ SP A+ PT TM+S N A
Sbjct: 291 GGSSSAAPLQIPVFQQQSTGNGNTVISFSNNASPMAMRAPTDNTMISFNNVSAA 344
>02_01_0161 -
1123890-1124210,1124599-1124673,1124841-1124903,
1125020-1125358
Length = 265
Score = 32.3 bits (70), Expect = 0.31
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = +2
Query: 20 FVDEAH--CAVLRDTIVVVGIIMAKGDKELEKPIVNNELPNPECRSTDNEDSESVPEQPL 193
F +E H A+LRD + ++ A+ + + + E+P+ CR E P P
Sbjct: 12 FTEEEHEVAAILRD---LADLVRARHRRRRRRRVQREEIPSWGCRRPRTTPGEKKPAPPA 68
Query: 194 DIGEHYLVRRSDES 235
D+G + S ++
Sbjct: 69 DVGRRHEAAASPDT 82
>02_05_0248 +
27145459-27145551,27145824-27145952,27146030-27146695,
27147170-27147756,27147882-27148225,27148808-27148815
Length = 608
Score = 31.1 bits (67), Expect = 0.70
Identities = 27/142 (19%), Positives = 57/142 (40%), Gaps = 2/142 (1%)
Frame = +2
Query: 119 NNELPNPECRSTDNEDSESVPEQPLDIGEHYLVRRSDESWHPAE-IIQSRYSTAESCYEY 295
N+++ +P + + + PL+ D+ PA + ++ E Y+
Sbjct: 49 NDDITSPVIEDDNTSTPKKISRIPLNCS--VFTPECDDKIRPAVGMTFEDIASVEKFYKS 106
Query: 296 YVHYVGYDRRLDEWVSRHRVMSDRFDVC-EQSNNNINCDHLLTDKSGRKITRNQKRKHDE 472
Y H VG+ R+ + V+ + VC Q ++N ++ +KI + R +
Sbjct: 107 YAHQVGFSVRIGQQKKLDGVVQCKHFVCSRQGWKHVNDKEIVDPSKKKKIKLKETRCGCD 166
Query: 473 INHVQKTYAEMDPTTAALEKEH 538
+ K ++ T A+L + H
Sbjct: 167 AHIYVKLCSDNKYTIASLVEHH 188
>12_01_0650 +
5500662-5501206,5502485-5502563,5503100-5503308,
5504396-5505146
Length = 527
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 194 DIGEHYLVRRSDESWHPAEIIQSRYSTAESCYEYYV-HYVGYDRRLDEWVS 343
D+GE YL++ S +S+ ++ + E +EYYV H + YD L WVS
Sbjct: 398 DVGEEYLIQLSRKSFVDLKLRNFHFGRNEG-HEYYVMHDLIYD--LATWVS 445
>03_02_0849 - 11768191-11771412
Length = 1073
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -1
Query: 556 NFSNSFMFLFKRGGRWI-HFGVSFLHMVYFVMFTFLIPCYFPAG--FVREQVVAVYVIVR 386
N SN L + R + +S+ H+ Y + F + C FP G F +++V+ +++
Sbjct: 397 NISNQMRILNEDNNRILPSLQISYHHLPYHLKQLFTLCCLFPVGHEFEKDEVIRLWIAEG 456
Query: 385 LL 380
L+
Sbjct: 457 LI 458
>02_01_0758 +
5623953-5624171,5624251-5624430,5624533-5624591,
5625243-5625390,5625476-5625547,5625636-5625746,
5626615-5626882,5627222-5627265,5627393-5627477,
5627554-5627600
Length = 410
Score = 28.7 bits (61), Expect = 3.8
Identities = 29/148 (19%), Positives = 61/148 (41%)
Frame = +2
Query: 89 GDKELEKPIVNNELPNPECRSTDNEDSESVPEQPLDIGEHYLVRRSDESWHPAEIIQSRY 268
GD +++ + P + T EDS+ + +G++ V++ DES +P +SR
Sbjct: 126 GDSSVDRNKAEKQEPRSSTKETSLEDSKEKRKTQKPLGQNSSVKKDDES-NP----ESRK 180
Query: 269 STAESCYEYYVHYVGYDRRLDEWVSRHRVMSDRFDVCEQSNNNINCDHLLTDKSGRKITR 448
+ Y + D R ++ + + ++ E +N+ T+++ K+ R
Sbjct: 181 AGGTPAYGFSFK---CDERAEKRKEFYSKLEEKIHAREMEISNLQAKSKETEEAELKMLR 237
Query: 449 NQKRKHDEINHVQKTYAEMDPTTAALEK 532
K + + + Y E P L+K
Sbjct: 238 --KSLNFKATPMPSFYQEPTPPKVELKK 263
>02_01_0107 +
785993-786359,786773-787703,787807-787975,788472-788588,
788815-788961
Length = 576
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 107 KPIVNNELPNPECRS-TDNEDSESVPEQPLDIGEHYLVRRSDESWHPA 247
K + N+E+PN E S +D + E D+G + ++E W PA
Sbjct: 214 KDLENHEIPNSETNSISDKQGDEEHQPAKKDVGIAWEDDENNEGWLPA 261
>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
Length = 518
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = -2
Query: 204 SPMSKGCSGTDSESSLSVLRHSGLGNSLFTIGFSNSLSPFAIIMPTTTMVSRNTAQCASS 25
+P S G S T +S S +G + ++ +SNS S MP+ V+ N +SS
Sbjct: 384 APSSTGTSSTAESNSGSATSVTGANSGSYSSAWSNSNSNSGSTMPSGIGVASNAG--SSS 441
Query: 24 TKW 16
W
Sbjct: 442 GSW 444
>04_01_0451 +
5845249-5846133,5846220-5846509,5855590-5856060,
5856898-5857063,5857100-5857498,5858031-5858075
Length = 751
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/73 (20%), Positives = 32/73 (43%)
Frame = +2
Query: 131 PNPECRSTDNEDSESVPEQPLDIGEHYLVRRSDESWHPAEIIQSRYSTAESCYEYYVHYV 310
P P+ R++ +E+ G+ + VR+++ EII ++ + Y H+
Sbjct: 383 PRPKIRTSSSEEEGYKFYLDYAKGKGFSVRKNNLKRKDGEIIWRQFVCSSEGYRELKHFE 442
Query: 311 GYDRRLDEWVSRH 349
+R+ + W H
Sbjct: 443 RIERKREPWALTH 455
>03_02_0144 + 5910246-5910734
Length = 162
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 126 SLFTIGFSNSLSPFAIIMPTTTMVSRNTAQCASS 25
++ T+ F+ S SP +P+ VSR T C+SS
Sbjct: 46 TMCTLPFTQSQSPAPAPLPSPAAVSRTTPGCSSS 79
>10_02_0154 - 5923251-5923604,5924167-5925567,5925639-5925986
Length = 700
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = -1
Query: 598 IDFIFSNLYPVYVFNFSNSFMFLFKRGG---RWIHFGVSFLHM----VYFVMFTFLIPCY 440
I ++ +LY + S + FL+ + W F + F+ + F++F +I
Sbjct: 227 ISYLGMDLYKLVEMELSLMYDFLYTKAAVIHTWYGFCIHFVSLFGTATTFLLFQLIISSS 286
Query: 439 FPAGFVREQVVAVYVIV 389
G+ RE VV YV++
Sbjct: 287 RGDGYSREDVVISYVLL 303
>02_02_0433 -
10178497-10178844,10180394-10180444,10181201-10181263,
10181427-10181471,10181772-10181816,10183894-10183923,
10184182-10184289,10186459-10186524,10186595-10186624,
10187147-10187501,10189323-10189345,10191421-10191447,
10192131-10192210,10192367-10192550
Length = 484
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 11 YGHFVDEAHCAVLRDTIVVVGIIMAKGDKELEKPIVNNELPNPECR 148
Y H A C +VV A+G ++L I ++PNP+C+
Sbjct: 411 YAHSQFPAFCTQPPPPLVVDSRAAAQGAQDLASTIGFQQIPNPKCQ 456
>01_06_0159 +
27089006-27089064,27089925-27090007,27090414-27090588,
27091442-27091592,27091629-27091752,27092378-27092446,
27093197-27093291
Length = 251
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 299 VHYVGYDR-RLDEWVSRHRVMSDRFDVCEQSNNNINCDHLLTDKS 430
+H VG++ ++D W R ++D + NN+N + LL+ K+
Sbjct: 203 LHLVGWNNVKIDVWTHSVRGLTDNDFILAAKINNLNLEGLLSKKA 247
>12_02_0223 + 15868889-15869182
Length = 97
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -2
Query: 261 DCIISAGCHDSSDRRTK*CSPMSKGCSGTDSESSLSVLRHSGL 133
D I +A C +S D K C+P GCS +S L L+ L
Sbjct: 44 DDICNASCVNS-DTIAKLCAPQCDGCSPEACQSCLQALKQECL 85
>11_01_0222 +
1740828-1740830,1741109-1741218,1741304-1741487,
1742159-1742344,1742631-1742849,1742958-1743171,
1743549-1743601,1743839-1743874
Length = 334
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +2
Query: 335 WVSRHRVMSDRFDVCEQSNNNINCDHLLTDKSGRKITRNQKRKHDEINHVQKTYAE 502
W++R R + + E++NN N D KS +K Q + DE+ +Q+ YA+
Sbjct: 189 WMNRKRTVLAG-EHKEENNNTANLDQSSEAKSDKK----QLSEEDEMKSIQEAYAK 239
>03_02_0507 -
8999902-9000649,9001106-9001225,9001314-9001394,
9001591-9001613
Length = 323
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/63 (22%), Positives = 33/63 (52%)
Frame = +2
Query: 389 NNNINCDHLLTDKSGRKITRNQKRKHDEINHVQKTYAEMDPTTAALEKEHEAITKVKYID 568
NNNI+ +++SG+ + ++KRKH + ++ Y + + + + E+ + K
Sbjct: 175 NNNIDSGSSGSEESGKHRSHSEKRKHKKSRKHKRRYDDSSDESNSESDDKESKRRRKEEK 234
Query: 569 RIQ 577
R++
Sbjct: 235 RLR 237
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/80 (23%), Positives = 39/80 (48%)
Frame = +2
Query: 341 SRHRVMSDRFDVCEQSNNNINCDHLLTDKSGRKITRNQKRKHDEINHVQKTYAEMDPTTA 520
+ HR +S + ++ NN N DHLL S K+ + ++I ++ +M+ T
Sbjct: 757 NNHRAIS--YYELVRATNNFNSDHLLGAGSFGKVFKG-NLDDEQIVAIKVLNMDMERATM 813
Query: 521 ALEKEHEAITKVKYIDRIQI 580
+ E E A+ ++ + ++I
Sbjct: 814 SFEVECRALRMARHRNLVRI 833
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,866,934
Number of Sequences: 37544
Number of extensions: 320248
Number of successful extensions: 1033
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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