Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11n23
         (601 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7977| Best HMM Match : MOZ_SAS (HMM E-Value=3.4e-21)               126   1e-29
SB_40014| Best HMM Match : Chromo (HMM E-Value=0.73)                   43   2e-04
SB_1276| Best HMM Match : MOZ_SAS (HMM E-Value=0)                      43   2e-04
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)                    34   0.10 
SB_21821| Best HMM Match : MRG (HMM E-Value=0)                         34   0.10 
SB_49389| Best HMM Match : JmjC (HMM E-Value=0.095)                    30   1.6  
SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)                    29   2.9  
SB_24737| Best HMM Match : KID (HMM E-Value=0.096)                     29   3.8  
SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)                     29   3.8  
SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)           28   5.0  
SB_24458| Best HMM Match : P60 (HMM E-Value=0.00014)                   28   5.0  
SB_1442| Best HMM Match : SRCR (HMM E-Value=0)                         28   5.0  
SB_38361| Best HMM Match : VPS9 (HMM E-Value=0.0012)                   28   6.6  
SB_29034| Best HMM Match : Nucleoplasmin (HMM E-Value=2.2)             28   6.6  
SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_46930| Best HMM Match : PWWP (HMM E-Value=0.017)                    27   8.8  
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_7977| Best HMM Match : MOZ_SAS (HMM E-Value=3.4e-21)
          Length = 570

 Score =  126 bits (304), Expect = 1e-29
 Identities = 64/93 (68%), Positives = 70/93 (75%)
 Frame = +2

Query: 323 RLDEWVSRHRVMSDRFDVCEQSNNNINCDHLLTDKSGRKITRNQKRKHDEINHVQKTYAE 502
           RLDEWV   RV     D+ +  +  I  D L  D   RKITRNQKRKHDEINHVQKTYAE
Sbjct: 57  RLDEWVEAARV-----DLQQNDDKPIIDDKLDVDGPERKITRNQKRKHDEINHVQKTYAE 111

Query: 503 MDPTTAALEKEHEAITKVKYIDRIQIGKYEIDT 601
           MDPTTAALEKEHEAITK+K+ID+ Q GKYEIDT
Sbjct: 112 MDPTTAALEKEHEAITKIKFIDKAQFGKYEIDT 144


>SB_40014| Best HMM Match : Chromo (HMM E-Value=0.73)
          Length = 153

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 19/44 (43%), Positives = 28/44 (63%)
 Frame = +2

Query: 245 AEIIQSRYSTAESCYEYYVHYVGYDRRLDEWVSRHRVMSDRFDV 376
           AEII  R    E  +EYYVH++ +++RLDEWV+  R+   R  +
Sbjct: 57  AEIISKREKGDE--FEYYVHFIDFNKRLDEWVTEDRLDKTRIQL 98


>SB_1276| Best HMM Match : MOZ_SAS (HMM E-Value=0)
          Length = 475

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 19/44 (43%), Positives = 28/44 (63%)
 Frame = +2

Query: 245 AEIIQSRYSTAESCYEYYVHYVGYDRRLDEWVSRHRVMSDRFDV 376
           AEII  R    E  +EYYVH++ +++RLDEWV+  R+   R  +
Sbjct: 57  AEIISKREKGDE--FEYYVHFIDFNKRLDEWVTEDRLDKTRIQL 98


>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
          Length = 1338

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
 Frame = +2

Query: 92  DKELEKPIVNNELPNPECRSTDNED-SESVPEQPLD--IGEHYLV---RRSDESWHPAEI 253
           + EL   +VN+    P   S  +E  S+  PE P D  +G+   V   R  ++  + A+I
Sbjct: 430 ESELAVDVVNS----PGSLSDISESRSDYCPEDPKDYNVGDKIQVKYGRGRNQLIYEAKI 485

Query: 254 IQSRYSTAESCYEYYVHYVGYDRRLDEWVSRHRVM 358
                  AE    + +HY G++ R DEW+S  RV+
Sbjct: 486 TTID-ENAEEGILFLIHYAGWNNRYDEWISPDRVV 519


>SB_21821| Best HMM Match : MRG (HMM E-Value=0)
          Length = 292

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = +2

Query: 278 ESCYEYYVHYVGYDRRLDEWVSRHRVMSDRFDVCEQSNNNINCDHLLTDKSGRKITRNQK 457
           E    Y +HY G+++  DEWV   RV+    D   Q    +   +L + K+ +K  ++  
Sbjct: 33  EKTARYLIHYNGWNKNWDEWVPESRVLKYN-DANLQKQRELREQNLKSKKARKKQEKSDS 91

Query: 458 RK 463
            K
Sbjct: 92  EK 93


>SB_49389| Best HMM Match : JmjC (HMM E-Value=0.095)
          Length = 486

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 116 VNNELPNPECRSTDNEDSESVPEQPLDIGEHYLVRRSDES 235
           ++ EL  P+ R  D ED + V E+PLD+ E +  +  D S
Sbjct: 442 IHGELNEPDVRRDDAEDEDEV-EEPLDLREDHERKGRDTS 480


>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
          Length = 847

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 425 KSGRKITRNQKRKHDEINHVQKTYAEMDPTTAALEKE 535
           +  R++T+  K K   +  ++ TY E++  ++ LEKE
Sbjct: 580 RESRRLTQILKTKDARLTQIENTYHELESKSSKLEKE 616


>SB_24737| Best HMM Match : KID (HMM E-Value=0.096)
          Length = 636

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 431 GRKITRNQKRKHDEINHVQKTYAEMDPTTAALEKEHEAITK 553
           G K+T++++ K DE+  V +T  E+       EK  + + K
Sbjct: 119 GEKLTKSEQEKSDELGKVWETMTELQSVIEDREKSIDKLEK 159


>SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 805

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/58 (22%), Positives = 29/58 (50%)
 Frame = +2

Query: 422 DKSGRKITRNQKRKHDEINHVQKTYAEMDPTTAALEKEHEAITKVKYIDRIQIGKYEI 595
           DK  +  T+N + +  +   V++ +   +     L+KEH+A+      D+ ++ K +I
Sbjct: 405 DKQLKDATKNLELEKKKYEKVKEQFTTTEQELKDLKKEHDALQSESKKDKAELAKLDI 462


>SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)
          Length = 1643

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 71  GIIMAKGDKELEKPIV-NNELPNPECRSTDNEDSESVPEQPLDIGE 205
           G    K D E++ P+  NN+L     +S+   + E   E+P +I E
Sbjct: 349 GTANPKADVEMDAPVESNNDLKQDVAQSSKTSEDECKSEEPFEIKE 394


>SB_24458| Best HMM Match : P60 (HMM E-Value=0.00014)
          Length = 351

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 92  DKELEKPIVNNELPNPECRSTDNEDSESVPEQPLDIGEHYL 214
           D+   KP+V  +   P  ++ +  D     + P D+ EHYL
Sbjct: 124 DEPPPKPLVKEKSKKPRAKNKEVFDLWGKEDTPKDVNEHYL 164


>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 2103

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -2

Query: 186 CSGTDSESSLSVLRHSGLGNSLFTIGFSNSLSPFAIIMPTTTMVSRNTAQCASSTKWP 13
           C GT  E+SL+   H+G G           ++ + +  PTTT     T    S+T+ P
Sbjct: 219 CQGT--EASLAECSHNGWGKHKCDHSMDAGVTCYGLEPPTTTKAPTTTIAPTSTTELP 274


>SB_38361| Best HMM Match : VPS9 (HMM E-Value=0.0012)
          Length = 882

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -1

Query: 499 GVSFLHMVYFVMFTFLIPCYFPAGFVREQVVAVYVIVRLLAYVEPI*HN 353
           G    H++ F  F F  P Y+PA  VR Q     V+ R   Y + + HN
Sbjct: 9   GERISHLLRFYYFYFGFPVYYPACIVRLQHFFRIVLQRSTDY-DKVIHN 56


>SB_29034| Best HMM Match : Nucleoplasmin (HMM E-Value=2.2)
          Length = 186

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 83  AKGDKELEKPIVNNELPNPECRSTDNEDSESVPEQPL 193
           AK +KE EK   N E+P  E  + + E ++S P + L
Sbjct: 143 AKKEKEPEKDKTNMEVPPKEKATLNTEKTDSTPVETL 179


>SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1325

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 41   AVLRDTIVVVGIIMAKGDKELEKPIVNNELPNPECRSTDNE 163
            A + DT V+ GI  A+  ++L KP+    LP+P C +  N+
Sbjct: 904  AHVSDTPVLCGINQARVMRQLTKPVECGNLPSP-CYAAINQ 943


>SB_46930| Best HMM Match : PWWP (HMM E-Value=0.017)
          Length = 237

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/38 (26%), Positives = 23/38 (60%)
 Frame = +2

Query: 230 ESWHPAEIIQSRYSTAESCYEYYVHYVGYDRRLDEWVS 343
           ++W+PA+I +      ++     +H+ G++ R DEW++
Sbjct: 26  QNWYPAKICRVDSHGKKAL----IHFEGWNHRFDEWIA 59


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 5    C*YGHFVDEAHCAVLRDTIVVVGIIMAKGDKELEKPIVNNELPN 136
            C  GH+V     +V   ++ V  + MAK  +E+ K      LP+
Sbjct: 1740 CGLGHYVSVYVASVFVASVFVASVFMAKPHREMRKCGTETRLPS 1783


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,633,303
Number of Sequences: 59808
Number of extensions: 379376
Number of successful extensions: 1292
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)