Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11n23
         (601 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY187043-1|AAO39757.1|  171|Anopheles gambiae putative antennal ...    25   1.9  
DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1 pro...    24   4.3  
AJ970245-1|CAI96717.1|  134|Anopheles gambiae putative reverse t...    24   4.3  

>AY187043-1|AAO39757.1|  171|Anopheles gambiae putative antennal
           carrier protein AP-1 protein.
          Length = 171

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 15/48 (31%), Positives = 19/48 (39%)
 Frame = +2

Query: 389 NNNINCDHLLTDKSGRKITRNQKRKHDEINHVQKTYAEMDPTTAALEK 532
           N  I CD L       K    +    D++N VQ T   +DP   A  K
Sbjct: 52  NGTIICDTLKCPAESFKCVIVKNSTKDDVNKVQVTRECLDPAGKATAK 99


>DQ219482-1|ABB29886.1|  545|Anopheles gambiae cryptochrome 1
           protein.
          Length = 545

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 236 WHPAEIIQSRYSTAESCYEYYVHYV 310
           W+P E+IQ+        Y+ ++H V
Sbjct: 141 WNPIEVIQTNGDIPPLTYQMFLHTV 165


>AJ970245-1|CAI96717.1|  134|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 134

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 207 CSPMSKGCSGTDSESSLSVLRHSGLGNSLFTIGFSNSL 94
           C+  S G +  D+E +   + H GL + L  + F + L
Sbjct: 62  CNRKSTGLALLDTEKAFDSIWHQGLLSKLIKLNFPSYL 99


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 638,905
Number of Sequences: 2352
Number of extensions: 12903
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58029966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)