Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11n23
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    31   0.011
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.75 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   1.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   4.0  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 30.7 bits (66), Expect = 0.011
 Identities = 21/101 (20%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
 Frame = +2

Query: 185 QPLDIGEHYLVRRSDESWHPA-EIIQSRYSTAESCYEYYVHYVGYDRRLDEWVS---RHR 352
           +P+++ +  +    D   H     I  +   + +C E ++  +GY ++LD WV    + +
Sbjct: 65  RPVEVDDDLIKAIIDSDRHSTTREIAEKLHVSHTCIENHLKQLGYVQKLDTWVPHELKEK 124

Query: 353 VMSDRFDVCE----QSNNNINCDHLLTDKSGRKITRNQKRK 463
            ++ R + C+    ++ N+     L+T      +  N KRK
Sbjct: 125 HLTQRINSCDLLKKRNENDPFLKRLITGDEKWVVYNNIKRK 165


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 150 LRHSGLGNSLFTIGFSNSLSPFAIIMPTTTMVSRNTAQCASSTKWPY 10
           LR +     +F++G    L  F  ++   T+ S N+     STK PY
Sbjct: 591 LRRALASLMVFSLGLFLLLDMFNCVVVEETIPSLNSTNVTLSTKCPY 637


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 249 RLYSRDTVQRNLVTNIMSIMSDMIEDSTNGCPATGLCQI 365
           R+ SRD   R +V     +  ++I  ++ GC A   C +
Sbjct: 116 RVLSRDVQVRAVVAQAYKVDVEVIGGASRGCTAVLRCVV 154


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 249 RLYSRDTVQRNLVTNIMSIMSDMIEDSTNGCPATGLCQI 365
           R+ SRD   R +V     +  ++I  ++ GC A   C +
Sbjct: 116 RVLSRDVQVRAVVAQAYKVDVEVIGGASRGCTAVLRCVV 154


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 221 RSDESWHPAEIIQSRYSTAESCYEYYVHYVGY 316
           +++++W P        + A    EYY HYV +
Sbjct: 438 QTNKTWLPVNENYKSLNLAAQKREYYSHYVAF 469


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 407 RSLCYCSTARIRRTY 363
           R LC C   R+RR Y
Sbjct: 403 RILCACCPGRVRRRY 417


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,937
Number of Sequences: 438
Number of extensions: 3657
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)