Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11n23
(601 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64610.1 68418.m08119 histone acetyltransferase, putative sim... 94 7e-20
At5g09740.1 68418.m01128 histone acetyltransferase, putative sim... 93 2e-19
At4g37280.1 68417.m05276 MRG family protein contains Pfam domain... 36 0.027
At3g04990.1 68416.m00542 hypothetical protein 31 0.77
At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR... 24 2.1
At5g01010.1 68418.m00001 expressed protein 29 2.4
At1g77600.1 68414.m09035 expressed protein weak similarity to Pd... 29 2.4
At1g67800.3 68414.m07738 copine-related low similarity to SP|Q99... 28 4.1
At1g67800.2 68414.m07739 copine-related low similarity to SP|Q99... 28 4.1
At1g67800.1 68414.m07737 copine-related low similarity to SP|Q99... 28 4.1
At1g58460.1 68414.m06650 expressed protein 28 5.4
At5g41750.2 68418.m05081 disease resistance protein (TIR-NBS-LRR... 27 9.5
At5g41750.1 68418.m05080 disease resistance protein (TIR-NBS-LRR... 27 9.5
At2g37320.1 68415.m04577 pentatricopeptide (PPR) repeat-containi... 27 9.5
At1g73590.1 68414.m08519 auxin efflux carrier protein, putative ... 27 9.5
At1g56660.1 68414.m06516 expressed protein 27 9.5
At1g40129.1 68414.m04766 hypothetical protein 27 9.5
At1g35710.1 68414.m04439 leucine-rich repeat transmembrane prote... 27 9.5
>At5g64610.1 68418.m08119 histone acetyltransferase, putative
similar to histone acetyltransferase [Homo sapiens]
gi|8317213|gb|AAF72665
Length = 445
Score = 93.9 bits (223), Expect = 7e-20
Identities = 56/141 (39%), Positives = 83/141 (58%), Gaps = 3/141 (2%)
Frame = +2
Query: 188 PLDIGEHYLVRRSDESWHPAEIIQSR--YSTAESCYEYYVHYVGYDRRLDEWVSRHRVMS 361
PL++G + + D +HP ++I+ R Y+ + YEYYVHY ++RRLDEW+ ++
Sbjct: 59 PLEVGTRVMCQWRDGKYHPVKVIERRKNYNGGHNDYEYYVHYTEFNRRLDEWIKLEQLDL 118
Query: 362 DRFDVCEQSNNNINCDHLLTDK-SGRKITRNQKRKHDEINHVQKTYAEMDPTTAALEKEH 538
D + D + DK + K+TR+QKRK DE HV+ + E+D AA +EH
Sbjct: 119 DSVECA--------LDEKVEDKVTSLKMTRHQKRKIDE-THVE-GHEELD---AASLREH 165
Query: 539 EAITKVKYIDRIQIGKYEIDT 601
E TKVK I I++GKYEI+T
Sbjct: 166 EEFTKVKNIATIELGKYEIET 186
>At5g09740.1 68418.m01128 histone acetyltransferase, putative
similar to histone acetyltransferase [Homo sapiens]
gi|8317213|gb|AAF72665
Length = 445
Score = 92.7 bits (220), Expect = 2e-19
Identities = 59/162 (36%), Positives = 91/162 (56%), Gaps = 5/162 (3%)
Frame = +2
Query: 131 PNPECRSTDNEDSESVPEQPLDIGEHYLVRRSDESWHPAEIIQSR--YSTAESCYEYYVH 304
P+ +D + PL++G + R D HP ++I+ R ++ ++ YEYYVH
Sbjct: 40 PDQAIIESDPSKKRKMGMLPLEVGTRVMCRWRDGKHHPVKVIERRRIHNGGQNDYEYYVH 99
Query: 305 YVGYDRRLDEWVSRHRVMSDRFDVCEQSNNNINC--DHLLTDK-SGRKITRNQKRKHDEI 475
Y ++RRLDEW D+ D+ +++ C D + DK + K+TR+QKRK DE
Sbjct: 100 YTEFNRRLDEW-----TQLDQLDL-----DSVECAVDEKVEDKVTSLKMTRHQKRKIDE- 148
Query: 476 NHVQKTYAEMDPTTAALEKEHEAITKVKYIDRIQIGKYEIDT 601
H++ + E+D AA +EHE TKVK I I++GKYEI+T
Sbjct: 149 THIE-GHEELD---AASLREHEEFTKVKNISTIELGKYEIET 186
>At4g37280.1 68417.m05276 MRG family protein contains Pfam domain
PF05712: MRG
Length = 320
Score = 35.5 bits (78), Expect = 0.027
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = +2
Query: 287 YEYYVHYVGYDRRLDEWVSRHRVM 358
++Y+VHY+G+++ DEWVS R++
Sbjct: 58 WKYFVHYLGWNKNWDEWVSADRLL 81
>At3g04990.1 68416.m00542 hypothetical protein
Length = 227
Score = 30.7 bits (66), Expect = 0.77
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 416 LTDKSGRKITRNQKRKHDEINHVQKTYAEMDPTTAALEKE 535
L D ++ KR++ E HVQK EM+ TA +KE
Sbjct: 104 LKDNQLVQVMAELKRRYSEARHVQKRKREMEDETATKKKE 143
>At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1039
Score = 23.8 bits (49), Expect(2) = 2.1
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 47 LRDTIVVVGIIMAKGDKELEK-PIVNNELPN 136
L +V VGI K DKELE+ I++ +L N
Sbjct: 34 LHKALVDVGIRTFKDDKELEEGDIISEKLVN 64
Score = 23.8 bits (49), Expect(2) = 2.1
Identities = 11/37 (29%), Positives = 15/37 (40%)
Frame = +2
Query: 194 DIGEHYLVRRSDESWHPAEIIQSRYSTAESCYEYYVH 304
DI LV SW ++ +Y T+ C E H
Sbjct: 56 DIISEKLVNAIQTSWFAVVVLSEKYVTSSWCLEELRH 92
>At5g01010.1 68418.m00001 expressed protein
Length = 409
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 565 YVFNFSNSFMFLFKRGGRWIHFGV 494
Y + NS+ FK+ GR++HFGV
Sbjct: 381 YKLVWDNSYSTFFKKVGRYLHFGV 404
>At1g77600.1 68414.m09035 expressed protein weak similarity to Pds5
(GI:16751524) [Schizosaccharomyces pombe]; weak
similarity to androgen-induced prostate proliferative
shutoff associated protein (GI:4559410) [Homo sapiens]
Length = 1285
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 222 DRMSHGTRLRLYSRDTVQRNLVTNIMSIMSDMIEDSTN 335
++ S T+ R + Q +L NI++IMSD++E+ N
Sbjct: 164 NQKSMKTQQRKANTQQTQHSLFNNILAIMSDVLEEEAN 201
>At1g67800.3 68414.m07738 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 433
Score = 28.3 bits (60), Expect = 4.1
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Frame = +2
Query: 311 GYDRRLDEWVSRHRVMSDRFDVCE--QSNNNINCDHLLTDKSGRKITRNQKRKHDEINHV 484
G RR + VS S +D Q+ N+ + + + SGR+ +N +RK+ + +
Sbjct: 14 GSGRRYERSVSGSSSYSSAWDQSSYYQTPNHPSASPVSSYNSGRQTPKNLERKY---SRI 70
Query: 485 QKTYAEMDPTTAALEKEHEAITKVKYIDRIQIGK 586
Y +D TAAL H + I I + K
Sbjct: 71 ADNYRSIDEVTAAL--SHAGLESSNLIVGIDVTK 102
>At1g67800.2 68414.m07739 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 453
Score = 28.3 bits (60), Expect = 4.1
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Frame = +2
Query: 311 GYDRRLDEWVSRHRVMSDRFDVCE--QSNNNINCDHLLTDKSGRKITRNQKRKHDEINHV 484
G RR + VS S +D Q+ N+ + + + SGR+ +N +RK+ + +
Sbjct: 34 GSGRRYERSVSGSSSYSSAWDQSSYYQTPNHPSASPVSSYNSGRQTPKNLERKY---SRI 90
Query: 485 QKTYAEMDPTTAALEKEHEAITKVKYIDRIQIGK 586
Y +D TAAL H + I I + K
Sbjct: 91 ADNYRSIDEVTAAL--SHAGLESSNLIVGIDVTK 122
>At1g67800.1 68414.m07737 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 433
Score = 28.3 bits (60), Expect = 4.1
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Frame = +2
Query: 311 GYDRRLDEWVSRHRVMSDRFDVCE--QSNNNINCDHLLTDKSGRKITRNQKRKHDEINHV 484
G RR + VS S +D Q+ N+ + + + SGR+ +N +RK+ + +
Sbjct: 14 GSGRRYERSVSGSSSYSSAWDQSSYYQTPNHPSASPVSSYNSGRQTPKNLERKY---SRI 70
Query: 485 QKTYAEMDPTTAALEKEHEAITKVKYIDRIQIGK 586
Y +D TAAL H + I I + K
Sbjct: 71 ADNYRSIDEVTAAL--SHAGLESSNLIVGIDVTK 102
>At1g58460.1 68414.m06650 expressed protein
Length = 144
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +2
Query: 401 NCDHLLTDKSGRKITRNQKRKHDEINHVQKTYAEMDPTTAALEKEHEAITKVKY-IDRIQ 577
N + KS K +N+K+ H+E + ++ + D T ++LEK + + + +D++
Sbjct: 72 NTQYWCKSKSKNK-NKNKKKVHEEQGYSERFNSSFDDTASSLEKVNSGFLQQAFPVDKLA 130
Query: 578 I 580
+
Sbjct: 131 L 131
>At5g41750.2 68418.m05081 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1068
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 317 DRRLDEWVSRHRVMSDRFDVCEQSNNNINCDHLLTDKSGRKITRNQ 454
DR+LD V+ +++DR V ++ ++ H L K GR+I Q
Sbjct: 455 DRKLDV-VNGFNILADRSLVRISTDGHVVMHHYLLQKLGRRIVHEQ 499
>At5g41750.1 68418.m05080 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1068
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 317 DRRLDEWVSRHRVMSDRFDVCEQSNNNINCDHLLTDKSGRKITRNQ 454
DR+LD V+ +++DR V ++ ++ H L K GR+I Q
Sbjct: 455 DRKLDV-VNGFNILADRSLVRISTDGHVVMHHYLLQKLGRRIVHEQ 499
>At2g37320.1 68415.m04577 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 500
Score = 27.1 bits (57), Expect = 9.5
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Frame = +2
Query: 128 LPNPECRSTDNEDSESVPEQPLD---IGEHYLVRRSDESWHPAEIIQSRYSTAESCYEYY 298
L N CR+ + S S + L+ E V R S +II S+ + +++
Sbjct: 4 LRNYYCRAFGYKQSRSCYSRSLNREIANESSEVERRARSLRVLDIISSKSGGVSNRQDHF 63
Query: 299 VHYVGYDRRLDEWVSRHRVMSDRFDVCEQSN 391
+V R+ D W R + +S+ FD+ N
Sbjct: 64 -GFVQEFRQTDSWRFRGQAISEDFDLSRTKN 93
>At1g73590.1 68414.m08519 auxin efflux carrier protein, putative
(PIN1) identical to putative auxin efflux carrier
protein; AtPIN1 [Arabidopsis thaliana] GI:4151319;
contains Pfam profile PF03547: Auxin Efflux Carrier
Length = 622
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = -2
Query: 162 SLSVLRHSGLGNSLFTIGFSNSLSP 88
S+S+L +GLG ++F++G +L+P
Sbjct: 506 SISILSDAGLGMAMFSLGLFMALNP 530
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 440 ITRNQKRKHDEINHVQKTYAEMDPTTAALEKEHEAITKVKYIDRIQIGKYE 592
++ NQ+ +E HV+ E+DP E E K K I++++ K E
Sbjct: 1 MSSNQENAKEEKLHVKIKTQELDPKEKGENVEVEMEVKAKSIEKVKAKKDE 51
>At1g40129.1 68414.m04766 hypothetical protein
Length = 567
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 17 HFVDEAHCAVLRDTIVVVGIIMAKGDKELEKPIVNNELPNPECR 148
H V A D + + I+ G + +P++N ELP E R
Sbjct: 268 HLVSTTSQACRADYVSKITILNKNGPPYVSQPVLNRELPKEEPR 311
>At1g35710.1 68414.m04439 leucine-rich repeat transmembrane protein
kinase, putative similar to many predicted protein
kinases
Length = 1120
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 41 AVLRDTIVVVGIIMAKGDKELEKPIVNNELPN 136
A L+DTI+ V + D+E+ KP+V E N
Sbjct: 868 ANLQDTIIAVKRLHDTIDEEISKPVVKQEFLN 899
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,857,633
Number of Sequences: 28952
Number of extensions: 262191
Number of successful extensions: 921
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -