Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11n22
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 36 0.004
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 36 0.004
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 35 0.011
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 33 0.035
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 28 1.3
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 27 2.3
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 26 5.3
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 7.0
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi... 25 9.2
SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29 |Schizosa... 25 9.2
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo... 25 9.2
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 36.3 bits (80), Expect = 0.004
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = +1
Query: 115 TDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRS 246
T++ RP +A++L+ + + NP + ++++K GE+WR+
Sbjct: 100 TERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 36.3 bits (80), Expect = 0.004
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = +1
Query: 115 TDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRS 246
T++ RP +A++L+ + + NP + ++++K GE+WR+
Sbjct: 100 TERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 34.7 bits (76), Expect = 0.011
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 109 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 249
K + PKR MSA++ + R K+K DNP ++ G+ W+ +
Sbjct: 11 KDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKEL 57
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 33.1 bits (72), Expect = 0.035
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +1
Query: 121 KPKRPMSAYLLWLNSARSKIKDD--NPGLKVTEIAKKAGEIWRSMY--DKSEWXXXXXXX 288
+PKRP SAY L+ + RS+IK+ V E+ K E W S+ D+ +
Sbjct: 116 QPKRPPSAYNLFQKNQRSEIKESLGEKSNDVKEVNKAMHEKWGSLSEDDRKTYEEEASKL 175
Query: 289 XXQYIVDLESFNAN 330
Y ++ ++NA+
Sbjct: 176 REAYEEEMAAYNAS 189
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 345 REKKENPKTREESETGAKNKESETGRR 425
++KK P R+E T K K+ GRR
Sbjct: 598 KKKKSKPVNRDEDSTSGKKKQVTQGRR 624
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 327 KWRRSRREKKENPKTREESETGAKNKESETGR 422
+W++ RE KE K +EE E ++ S TGR
Sbjct: 435 EWKKDERE-KEKRKRQEEEEENNLDRTSWTGR 465
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -3
Query: 613 ELSNKKVYYLNLSNKSQKEKKHSFHGPEFKMINSKTLKLKYKFKEI 476
E + K YY +LS + + +KH PE+K K ++ + K++
Sbjct: 53 ESAQVKKYYSDLS--ALERQKHMLENPEYKYTPKKRSTVRRRHKKV 96
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 529 ILDHEMNVFFLSGFCYLDLNNTLFCSITHNK 621
IL ++ GFCYL L +F SI+ N+
Sbjct: 1063 ILSIKIEKSLYKGFCYLYLTLKVFLSISSNR 1093
>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 61 TKITRFCRIKIHI*GFKMTDKPKR 132
+K+ RFCR K H FKM P++
Sbjct: 26 SKVFRFCRSKCHK-NFKMKRNPRK 48
>SPBC1921.07c ||SPBC21D10.13|SAGA complex subunit Sgf29
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 9.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 227 AFLAISVTFNPGLSSFIFDLALFNHNKYAD 138
+F A +VTF PG+ S F L HN+ D
Sbjct: 105 SFTANTVTFTPGM-SVAFKLPYTRHNEGGD 133
>SPCC1682.03c |mug174||meiotically upregulated gene
Mug174|Schizosaccharomyces pombe|chr 3|||Manual
Length = 626
Score = 25.0 bits (52), Expect = 9.2
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 154 WLNSARSKIKDDNPGL 201
W N+ RS ++DDN G+
Sbjct: 411 WSNTLRSSVEDDNTGV 426
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,115,077
Number of Sequences: 5004
Number of extensions: 36476
Number of successful extensions: 120
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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