Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11n22
(639 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 47 9e-06
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 46 2e-05
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 44 6e-05
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 44 1e-04
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 44 1e-04
At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb... 42 3e-04
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 42 5e-04
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 41 6e-04
At2g17560.1 68415.m02032 high mobility group protein gamma (HMGg... 41 6e-04
At3g28730.1 68416.m03587 structure-specific recognition protein ... 41 8e-04
At4g35570.1 68417.m05054 high mobility group protein delta (HMGd... 35 0.052
At1g65090.1 68414.m07379 expressed protein 33 0.12
At4g33390.1 68417.m04746 hypothetical protein contains Pfam prof... 30 1.5
At5g51820.1 68418.m06425 phosphoglucomutase, chloroplast (PGM) (... 27 7.9
At3g07040.1 68416.m00836 disease resistance protein RPM1 (CC-NBS... 27 7.9
At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family ... 27 7.9
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 47.2 bits (107), Expect = 9e-06
Identities = 20/48 (41%), Positives = 34/48 (70%)
Frame = +1
Query: 121 KPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE 264
KPK+P+SAYL++ N R+ +K +N V E+AK AGE W+++ ++ +
Sbjct: 245 KPKQPISAYLIYANERRAALKGENK--SVIEVAKMAGEEWKNLSEEKK 290
Score = 34.7 bits (76), Expect = 0.052
Identities = 12/49 (24%), Positives = 27/49 (55%)
Frame = +1
Query: 118 DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE 264
+KPK+P S+Y L+ AR + +++PG+ + + W + ++ +
Sbjct: 370 NKPKKPTSSYFLFCKDARKSVLEEHPGINNSTVTAHISLKWMELGEEEK 418
Score = 31.1 bits (67), Expect = 0.65
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 127 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 249
KRP + Y+LW +++K NP E + G W+ +
Sbjct: 130 KRPSTPYILWCKDNWNEVKKQNPEADFKETSNILGAKWKGI 170
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 46.0 bits (104), Expect = 2e-05
Identities = 19/48 (39%), Positives = 33/48 (68%)
Frame = +1
Query: 121 KPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE 264
KPK P+SA+L++ N R+ ++++N V E+AK GE W+++ DK +
Sbjct: 254 KPKHPVSAFLVYANERRAALREENK--SVVEVAKITGEEWKNLSDKKK 299
Score = 35.9 bits (79), Expect = 0.023
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 127 KRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 249
KRP S+Y+LW +++K +NP E + G W+S+
Sbjct: 139 KRPSSSYVLWCKDQWTEVKKENPEADFKETSNILGAKWKSL 179
Score = 33.5 bits (73), Expect = 0.12
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +1
Query: 118 DKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSMYDKSE 264
+KPK+P S+Y L+ R K+ ++ PG + W+ + ++ +
Sbjct: 377 NKPKKPASSYFLFSKDERKKLTEERPGTNNATVTALISLKWKELSEEEK 425
>At1g20693.1 68414.m02592 high mobility group protein beta1
(HMGbeta1) / HMG protein beta1 nearly identical to HMG
protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
Length = 144
Score = 44.4 bits (100), Expect = 6e-05
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Frame = +1
Query: 109 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSMYD--KSEWXXXX 279
K +KPKRP SA+ +++ R K +NP K V + K AG+ W+S+ D K+ +
Sbjct: 33 KDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKA 92
Query: 280 XXXXXQYIVDLESFN 324
+Y +++++N
Sbjct: 93 EKRKVEYEKNIKAYN 107
>At3g51880.2 68416.m05690 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 185
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Frame = +1
Query: 109 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM--YDKSEWXXXX 279
K +KPKR SA+ ++L R K +NP +K V+ + K G+ W+SM +K+ +
Sbjct: 48 KDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKA 107
Query: 280 XXXXXQYIVDLESFNAN 330
+Y ++++N N
Sbjct: 108 AKRKAEYEKQMDAYNKN 124
>At3g51880.1 68416.m05689 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 178
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Frame = +1
Query: 109 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM--YDKSEWXXXX 279
K +KPKR SA+ ++L R K +NP +K V+ + K G+ W+SM +K+ +
Sbjct: 48 KDPNKPKRAPSAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKA 107
Query: 280 XXXXXQYIVDLESFNAN 330
+Y ++++N N
Sbjct: 108 AKRKAEYEKQMDAYNKN 124
>At1g20696.1 68414.m02593 high mobility group protein beta2
(HMGbeta2) / HMG protein beta2 nearly identical to HMG
protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361
Length = 141
Score = 41.9 bits (94), Expect = 3e-04
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Frame = +1
Query: 109 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSMYD--KSEWXXXX 279
K +KPKRP SA+ +++ R K+++P K V + K GE W+S+ D K+ +
Sbjct: 30 KDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKA 89
Query: 280 XXXXXQYIVDLESFN 324
+Y +++++N
Sbjct: 90 DKRKVEYEKNMKAYN 104
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Frame = +1
Query: 115 TDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM--YDKSEWXXXXXXX 288
++KPKRP++A+ ++++ R K ++ G + AK GE W+S+ +K +
Sbjct: 112 SNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDAAKIGGEKWKSLTEEEKKVYLDKAAEL 171
Query: 289 XXQYIVDLESFNAN 330
+Y LES +A+
Sbjct: 172 KAEYNKSLESNDAD 185
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 41.1 bits (92), Expect = 6e-04
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +1
Query: 115 TDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM 249
T PK+P +A+ +L+ R + +++NP +K + EI K GE W++M
Sbjct: 60 TKMPKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTM 105
>At2g17560.1 68415.m02032 high mobility group protein gamma
(HMGgamma) / HMG protein gamma nearly identical to HMG
protein (HMGgamma) [Arabidopsis thaliana] GI:2832355
Length = 138
Score = 41.1 bits (92), Expect = 6e-04
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Frame = +1
Query: 109 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM--YDKSEWXXXX 279
K ++PKRP SA+ ++L R + NP K V + K AG W++M DK+ +
Sbjct: 30 KDPNQPKRPPSAFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMTDEDKAPYVAKA 89
Query: 280 XXXXXQYIVDLESFN 324
+YI +++ +N
Sbjct: 90 ESRKTEYIKNVQQYN 104
>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
high mobility group protein / HMG protein nearly
identical to SP|Q05153 Structure-specific recognition
protein 1 homolog (HMG protein) {Arabidopsis thaliana};
contains Pfam profile PF00505: HMG (high mobility group)
box; contains Pfam profile PF03531: Structure-specific
recognition protein
Length = 646
Score = 40.7 bits (91), Expect = 8e-04
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +1
Query: 109 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIWRSM 249
K + PKR MS ++ + R IK ++PG+ E+ K G+ WR M
Sbjct: 557 KDPNAPKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQM 603
>At4g35570.1 68417.m05054 high mobility group protein delta
(HMGdelta) / HMG protein delta identical to HMG protein
(HMGdelta) [Arabidopsis thaliana] GI:2832363
Length = 125
Score = 34.7 bits (76), Expect = 0.052
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Frame = +1
Query: 109 KMTDKPKRPMSAYLLWLNSARSKIKDDNPGLK-VTEIAKKAGEIWRSM--YDKSEWXXXX 279
K ++PK+P S + ++L+ R + NP K V + + AG+ W++M +++ +
Sbjct: 29 KDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKS 88
Query: 280 XXXXXQYIVDLESFN---ANG 333
+Y V ++ +N ANG
Sbjct: 89 QSKKTEYAVTMQQYNMELANG 109
>At1g65090.1 68414.m07379 expressed protein
Length = 284
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +3
Query: 348 EKKENPKTREESETGAKNKESETGR 422
EK+E P+TR E ETGA E+ TG+
Sbjct: 178 EKREAPETRREGETGATKIETSTGK 202
>At4g33390.1 68417.m04746 hypothetical protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827)
Length = 779
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 327 KWRRSRREKKENPKTREESETGAKNKESET 416
KWR +K++N + +S G+K KE+ET
Sbjct: 712 KWREVSEKKRKNGSSHGKSIQGSKEKEAET 741
>At5g51820.1 68418.m06425 phosphoglucomutase, chloroplast (PGM)
(PGMP) / glucose phosphomutase identical to SP|Q9SCY0
Phosphoglucomutase, chloroplast precursor (EC 5.4.2.2)
(Glucose phosphomutase) (PGM) {Arabidopsis thaliana}
Length = 623
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 142 AYLLWLNSARSKIKDDNPGLKVTEIAKKAGEIW 240
A L WL+ + KD PG K+ +A E W
Sbjct: 451 AVLAWLSILAHRNKDTKPGDKLVSVADVVKEYW 483
>At3g07040.1 68416.m00836 disease resistance protein RPM1
(CC-NBS-LRR class), putative domain signature CC-NBS-LRR
exists, suggestive of a disease resistance protein.
Identical to RPM1 (gi:1361985)
Length = 926
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -3
Query: 589 YLNLSNKSQKEKKHSFHGPEFKMINSKTLKLKY-KFKEI 476
YLNLS KE +FH K++N +TL K+ K +E+
Sbjct: 608 YLNLSKTQVKELPKNFH----KLVNLETLNTKHSKIEEL 642
>At1g28060.1 68414.m03435 small nuclear ribonucleoprotein family
protein / snRNP family protein contains similarity to
U4/U6 small nuclear ribonucleoprotein hPrp3 [Homo
sapiens] gi|2708307|gb|AAC51926
Length = 786
Score = 27.5 bits (58), Expect = 7.9
Identities = 20/69 (28%), Positives = 32/69 (46%)
Frame = +3
Query: 225 SRRNLEVHV*QKRMGRKGGKSQRTIHCRFRII*CKWRRSRREKKENPKTREESETGAKNK 404
S+R H R G + + RT R R + R R+++++ E S G+K K
Sbjct: 38 SKRRDSDHYRSSRRGDREDERDRTKDRRGRSVERGEREGSRDREKHH--HERSHEGSKEK 95
Query: 405 ESETGRRGR 431
ES + R+ R
Sbjct: 96 ESRSKRKDR 104
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,811,204
Number of Sequences: 28952
Number of extensions: 180725
Number of successful extensions: 575
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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