Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11n21
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 35 0.011
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 33 0.035
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 31 0.11
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 30 0.33
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.75
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch... 28 1.00
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 28 1.3
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 27 1.7
SPBC83.04 |apc15||anaphase-promoting complex subunit Apc15 |Schi... 27 1.7
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 27 1.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.3
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 27 3.0
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 27 3.0
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 26 4.0
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 26 5.3
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 26 5.3
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 26 5.3
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 26 5.3
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 25 7.0
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 25 7.0
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 7.0
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 25 7.0
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 7.0
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 25 7.0
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 25 7.0
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 25 9.3
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 25 9.3
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 34.7 bits (76), Expect = 0.011
Identities = 25/106 (23%), Positives = 47/106 (44%)
Frame = +1
Query: 292 DSDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGMGRSTTTEDIDDHLMSEEDMKQSLKM 471
DS EE RLTSSR + + E S+ S+ E + E K+++
Sbjct: 18 DSSEENRLTSSRLKKQDDSSSEEESSEEESASSSESESSEEESESEESEVEVPKKKAVAA 77
Query: 472 AKEAIANLERDLQKMDTKSSPKSAQMDEINLEAGAEVRKDIDVAKE 609
++++ ++ E ++ +T+S S DE E+ +E + + E
Sbjct: 78 SEDSESDSESSEEEEETESEEDSEVSDESESESESESESEEESESE 123
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 33.1 bits (72), Expect = 0.035
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = -1
Query: 395 IPVDVKAASSSHNLTF--TFSLQFSRELVNLFSSSESRYK*YPI 270
I V V A+ +S NL F S F L+N+FSS+ S+Y+ YPI
Sbjct: 580 ISVPVSASDASSNLAFLTNMSSNFLSVLLNVFSSTPSQYR-YPI 622
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 31.5 bits (68), Expect = 0.11
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Frame = +1
Query: 295 SDEEKRLTSSRENCNEKVKVKLCDEEAALT--STGMGRSTTTEDIDDHLMSEEDMKQSLK 468
S+EE + ++ N +EK VK+ DE A +T ++ +G+S+ D SE + S
Sbjct: 147 SNEEVGIPAT--NSSEKSNVKIADEIAEVTHSNSSIGKSSADLSSDSSSDSESNTSFSET 204
Query: 469 MAKEAIANLERDLQKMDTKSSPKS 540
+E A + D + M + PK+
Sbjct: 205 DVEEEKAEEKSDAESMAPSTPPKT 228
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 29.9 bits (64), Expect = 0.33
Identities = 17/84 (20%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +1
Query: 91 LGEHLDTFKTLNGDFSDTTVRERKSTAQAELDHHLNQNVDDGISNGRSLHAKKPIIVKKK 270
L E L+ D D +R+R+++++ + + ++ + NG + KK +VK++
Sbjct: 42 LSESLNKKSKSESDEDDIPIRKRRASSKKNMSNSSSKKRAKVMGNGGLKNGKKTAVVKEE 101
Query: 271 IGYH-LYRDSDEEKRLTSSRENCN 339
++ + + S + KR++ + + N
Sbjct: 102 EDFNEIAKPSPKHKRVSKANGSKN 125
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 28.7 bits (61), Expect = 0.75
Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 5/127 (3%)
Frame = +1
Query: 244 KKPIIVKKKIGYHLYRDSDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGMGRSTTTEDI 423
KKP KK + + +E+ + E +EK V+ + + S +D+
Sbjct: 75 KKPSKKSKKAKANAFEAFADEQSVEEEEEEDSEK-PVRKNKKSSKKASPKNAFDALADDM 133
Query: 424 DDHLMSEEDMKQSLKMAKEAIANLERD-----LQKMDTKSSPKSAQMDEINLEAGAEVRK 588
DD + EE+ + S K K+ + +D L D +SS K + + + E +K
Sbjct: 134 DDLSLDEEESESSEKSKKKKKKSKSKDDGSEALDDGDIESSEKDKKKKKKSKENDDAPKK 193
Query: 589 DIDVAKE 609
D K+
Sbjct: 194 DRKTRKK 200
>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 411
Score = 28.3 bits (60), Expect = 1.00
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = +1
Query: 418 DIDDHLMSEEDMKQSLKMAKEAIANLERDLQKMDTKSSPKSAQMDEINLEAGAEVRKDID 597
++DDHL S MA+E + ++K+D K P MD+ E ++R +
Sbjct: 121 NVDDHLSSNP------LMAEEYAPEIFEYIRKLDLKCLPNPKYMDQ-QKELTWKMR---E 170
Query: 598 VAKEALEQIHQNF 636
+ E L +IH NF
Sbjct: 171 ILNEWLVEIHSNF 183
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 27.9 bits (59), Expect = 1.3
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +1
Query: 214 GISNGRSLHAKKPIIVKKKIGYHLYRDSDEEKRLTS-SRENCNEKVKVKLCDEEAALTST 390
GI N LHA KP+I K +HL+ S L S S E+ + DE T
Sbjct: 128 GIQNTWGLHAPKPVISIIKKSHHLFSGSPLRLDLNSFSSEDNADATNSFYLDEPEFCTIK 187
Query: 391 G 393
G
Sbjct: 188 G 188
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 27.5 bits (58), Expect = 1.7
Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 2/150 (1%)
Frame = +1
Query: 193 LNQNVDDGISNGRSLHAKKPIIVKKKIGYHLYRDSDEEKRLTSSRENCNEKVKVKLCDEE 372
+N + D G S S A + + I + D DE S E E + + ++
Sbjct: 113 MNWDFDMG-SKTESNRASNTVDLDAIISRNRKPDDDEFPSSFPSEEELQEPEQENIDSDD 171
Query: 373 AALTSTGMGRSTTTEDIDDHLM--SEEDMKQSLKMAKEAIANLERDLQKMDTKSSPKSAQ 546
L G G E+ D+ SE + + + + AN+ D+ + ++
Sbjct: 172 EDLAIDGFGAGAIAENEDESSQDESESEEEDDITEPVPSFANISTQDFNSDSAAGSSDSE 231
Query: 547 MDEINLEAGAEVRKDIDVAKEALEQIHQNF 636
DE + + D K + H +F
Sbjct: 232 EDEEEIAKKNAFFAEGDKEKSMMTTTHSSF 261
>SPBC83.04 |apc15||anaphase-promoting complex subunit Apc15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 27.5 bits (58), Expect = 1.7
Identities = 21/93 (22%), Positives = 49/93 (52%)
Frame = +1
Query: 340 EKVKVKLCDEEAALTSTGMGRSTTTEDIDDHLMSEEDMKQSLKMAKEAIANLERDLQKMD 519
EK +V+L +E A+ G R+ ++ + + D+++ + +EA + E D +++
Sbjct: 27 EKEEVRLETQELAIKQFGF-RTIRPIGLNRSMQEQLDLEEQER--EEANQDTELDEEELG 83
Query: 520 TKSSPKSAQMDEINLEAGAEVRKDIDVAKEALE 618
+ S P+ +MD+ ++ E +D D+ + L+
Sbjct: 84 SGSFPEEGEMDD--MDGDNEEVEDHDIEEVDLD 114
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 27.5 bits (58), Expect = 1.7
Identities = 22/96 (22%), Positives = 40/96 (41%)
Frame = +1
Query: 349 KVKLCDEEAALTSTGMGRSTTTEDIDDHLMSEEDMKQSLKMAKEAIANLERDLQKMDTKS 528
K+ L D A+ GR + I D + ++ +++ +E I N+E L K +
Sbjct: 5 KLNLEDVNASTKKYSRGRKLNPKKIKD-----KKLRSNIQKIEERIENVESSLAKTEILH 59
Query: 529 SPKSAQMDEINLEAGAEVRKDIDVAKEALEQIHQNF 636
++ LE + R+D ALE ++F
Sbjct: 60 EDNPGLLEAEGLERTYKFRQDQLAPNVALETATKSF 95
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +1
Query: 139 DTTVRERKSTAQAELDHHLNQNVDDGISNGRSLHAKKPIIVKKKIGYHLYRDSDEEKRLT 318
+T+ RKS+ E HH N+ D S SL + +K + HL R S +
Sbjct: 1293 ETSTSSRKSSKSGEHHHHHNEGHADSSSTRTSLAHQDS---RKSLHRHLSRSSSRASKKP 1349
Query: 319 S 321
S
Sbjct: 1350 S 1350
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/43 (23%), Positives = 26/43 (60%)
Frame = +1
Query: 493 LERDLQKMDTKSSPKSAQMDEINLEAGAEVRKDIDVAKEALEQ 621
LE++ +M +++ + +E N+E E +DI+++ E+ ++
Sbjct: 25 LEKEHLRMTQQNAEIEKEDEEYNIEEEEEAERDIEISSESSDE 67
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 26.6 bits (56), Expect = 3.0
Identities = 24/87 (27%), Positives = 37/87 (42%)
Frame = +1
Query: 217 ISNGRSLHAKKPIIVKKKIGYHLYRDSDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGM 396
I R L + G H DSDE K SS E+ +E + K ++ +L +
Sbjct: 258 IPGRRPLSISSDLYNDSNSGSHSNDDSDETKLKQSSTESSSELLDEKDKFDKNSLNDPFV 317
Query: 397 GRSTTTEDIDDHLMSEEDMKQSLKMAK 477
T + +H +SEE K S K ++
Sbjct: 318 ---TIRKSSYEHEISEEHKKHSKKRSE 341
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +1
Query: 478 EAIANLERDLQKMDTKSSPKSAQMDEINLEAGAEVRKDIDVAKEALEQIHQNF 636
E + NLER L+++ + + DE + E RK+ + +E I + +
Sbjct: 414 EVLDNLERKLRQLRVEIRALEREKDEASKERLKAARKEAEQVEEETRPIREKY 466
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.8 bits (54), Expect = 5.3
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 382 TSTGMGRSTTTEDIDDHLMSEE 447
+ G+ ST ED+D+H +S+E
Sbjct: 658 SQAGINPSTKLEDLDEHTLSDE 679
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 5.3
Identities = 21/92 (22%), Positives = 41/92 (44%)
Frame = +1
Query: 244 KKPIIVKKKIGYHLYRDSDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGMGRSTTTEDI 423
+KP + KKK E T +EN ++ + +EEA + R+T+ +
Sbjct: 297 RKPTLRKKKS----IPKKQNESSSTIQKENTVQQ-EASSSEEEAVKSLPETQRTTSRIET 351
Query: 424 DDHLMSEEDMKQSLKMAKEAIANLERDLQKMD 519
+ + EE+M+ + +E + N E + + D
Sbjct: 352 QEEEIKEEEMEGEEEEEEEEVPNYESENELED 383
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 295 SDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGMGR 402
SD+E+ + C EK K K C+ E + G GR
Sbjct: 74 SDDEESCEKKKPKCCEKKKPKCCESE---QNNGCGR 106
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.8 bits (54), Expect = 5.3
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 178 ELDHHLNQNVDDGISN 225
E+DHH+ + +DD +SN
Sbjct: 394 EIDHHVQEIIDDVVSN 409
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/47 (21%), Positives = 25/47 (53%)
Frame = +1
Query: 415 EDIDDHLMSEEDMKQSLKMAKEAIANLERDLQKMDTKSSPKSAQMDE 555
+D+ D ++ + + + +AI +ERD+Q+ K A++++
Sbjct: 751 DDVKDLKQRLPELDRLILQSDQAIKKIERDMQEWKHNKGSKMAELEK 797
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 7.0
Identities = 19/77 (24%), Positives = 35/77 (45%)
Frame = +1
Query: 370 EAALTSTGMGRSTTTEDIDDHLMSEEDMKQSLKMAKEAIANLERDLQKMDTKSSPKSAQM 549
E T + RS + + +D+K+ + ++ N ER+ + + S S Q+
Sbjct: 147 ETLSTQYSIQRSQWVREDEKKKKEIQDLKELYEKSEHGAKNWERERETFQNQVSQMSKQL 206
Query: 550 DEINLEAGAEVRKDIDV 600
D +LE E RKD ++
Sbjct: 207 D--SLEKLCE-RKDEEI 220
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.4 bits (53), Expect = 7.0
Identities = 19/88 (21%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = +1
Query: 283 LYRDSDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGMGRSTTTEDIDDHLMSEEDMKQS 462
L + + +KRLT+ E+ + +++ ++ + LTS + TE+++++ + S
Sbjct: 277 LEEEVETQKRLTALWESKSSELQSEVAALQEKLTSQQSLYNNVTEELNNNKQQLLISENS 336
Query: 463 LKMAKEAIANLERDLQKM-DTKSSPKSA 543
L+ +E ++ +LQ + + K++ SA
Sbjct: 337 LRELQEKYDSVVSELQVVKENKNTSVSA 364
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 25.4 bits (53), Expect = 7.0
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +1
Query: 364 DEEAALTSTGMGRSTTTEDIDDHLMSE-EDMKQSLKMAKEAIANLERDLQKMDTK 525
+ + L + + + ED HL E D+KQ + + LERD++ +D+K
Sbjct: 27 ESTSVLYTIDLDMESDVEDAFFHLDRELHDLKQQISSQSKQNFVLERDVRYLDSK 81
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 7.0
Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Frame = +1
Query: 229 RSLHAKKPIIVKKKIGYHLYRDSDEEKRLTSSRENCNEKVKVKLCDEEAALTSTGMGRST 408
+S H+ K ++ Y L + SD + L + ++ N+ + + +A + S ++
Sbjct: 163 KSAHSTKTVVDALYKSY-LEKQSDYSELLDNYKKQLNKASESCKGNYQACIESRSTLITS 221
Query: 409 TTEDIDDH--LMSEEDMKQSLKMAKEAIANLE 498
I++ L+SEE+ +SLK + I+NLE
Sbjct: 222 LESLIEEQKKLLSEEE--ESLKSVESIISNLE 251
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 25.4 bits (53), Expect = 7.0
Identities = 17/90 (18%), Positives = 35/90 (38%)
Frame = +1
Query: 82 PAQLGEHLDTFKTLNGDFSDTTVRERKSTAQAELDHHLNQNVDDGISNGRSLHAKKPIIV 261
PA++ H ++ +T D + E++ L L +++ + + K P+
Sbjct: 796 PAEIKRHKESSETKPVDKEEVKKNEKEKDDPMRLAQQLLESLAPDFALHENTQQKSPVEK 855
Query: 262 KKKIGYHLYRDSDEEKRLTSSRENCNEKVK 351
KK+ Y +E +S+ VK
Sbjct: 856 PKKLRKDRYASVEEFDYFSSTEHASKRSVK 885
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 25.4 bits (53), Expect = 7.0
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Frame = +1
Query: 277 YHLYRDSDEEKRLTSSRENCNEKVKVKL--CDEEAALTSTGMGRSTTTEDIDDHLMSEE- 447
Y LY + S + C + V + C E L TG G+ + + DH + +E
Sbjct: 492 YALYSGWPGDPTFRKSNDVCIALIGVSIIACGIEFLLDKTGFGQFNASFNNHDHEVEDEQ 551
Query: 448 ---DMKQSLKMAKEAIA 489
D+K +L +++A A
Sbjct: 552 EMTDIKPALPSSQQADA 568
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -1
Query: 623 ICSSASFATSISLRTSAPASKLISSICADFGLDLVSIFCRSLSR 492
+ S +SI+ +S L++ C DFG+ +V + R + R
Sbjct: 523 LIDSLDVGSSITHAIYQHSSDLVAVACDDFGIRIVDVQTRKIVR 566
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 25.0 bits (52), Expect = 9.3
Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 2/118 (1%)
Frame = +1
Query: 289 RDSDEEKRLTSSRENCNEKVK-VKLCDEEAALTSTGMGRSTTTEDIDDHLMSEEDMKQSL 465
R++ + L + ++ CNEK+K + + EEA + + + + + +D
Sbjct: 912 RNAAKRSLLLARKKECNEKIKSLGVLPEEAFIKYVSTSSNAIVKKLHKINEALKDYGSVN 971
Query: 466 KMAKEAIANLERDLQKMDTKSSPKSAQMDEIN-LEAGAEVRKDIDVAKEALEQIHQNF 636
K A E N + + + + I+ L + RKD + + +Q+ ++F
Sbjct: 972 KKAYEQFNNFTKQRDSLLARREELRRSQESISELTTVLDQRKD-EAIERTFKQVAKSF 1028
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.129 0.354
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,321,137
Number of Sequences: 5004
Number of extensions: 42147
Number of successful extensions: 169
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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