Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11n20
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 62 9e-11
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 49 5e-07
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 49 7e-07
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 47 2e-06
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 46 5e-06
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 43 4e-05
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar... 29 0.59
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ... 27 3.1
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 26 4.2
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu... 26 4.2
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 26 4.2
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi... 26 4.2
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun... 26 4.2
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.5
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo... 26 5.5
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu... 26 5.5
SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase |Schizosaccharo... 26 5.5
SPAC4G9.10 |arg3||ornithine carbamoyltransferase Arg3|Schizosacc... 25 7.3
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 25 9.6
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 25 9.6
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 25 9.6
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 25 9.6
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 25 9.6
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 25 9.6
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 25 9.6
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 61.7 bits (143), Expect = 9e-11
Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Frame = +3
Query: 258 LHAIPDEIKNLINLQSLLMFGNKIEVFNENITTLRKLKVLDLSRNELKSIPESLNNMKEL 437
+ +I EI L+ L + N + F E++ L L++LD+SRN++K +PES + L
Sbjct: 64 IKSIGPEILKFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNKIKQLPESFGALMNL 123
Query: 438 TSINFSSNQIEDMPK-IGDLPNLIIIDISNNKL 533
++ S N++ ++P I +PNL I+ I NN +
Sbjct: 124 KVLSISKNRLFELPTYIAHMPNLEILKIENNHI 156
Score = 39.1 bits (87), Expect = 6e-04
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +3
Query: 375 LDLSRNELKSIPESLNNMKELTSINFSSNQIEDMPK-IGDLPNLIIIDISNNKLKSFLDV 551
L L N +KSI + L +N SN + + P+ + L +L I+DIS NK+K +
Sbjct: 57 LALGHNFIKSIGPEILKFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNKIKQLPES 116
Query: 552 ESANLPHLTDLKLKSNLIESIPSCI 626
A L +L L + N + +P+ I
Sbjct: 117 FGA-LMNLKVLSISKNRLFELPTYI 140
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 49.2 bits (112), Expect = 5e-07
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Frame = +3
Query: 324 KIEVFNENI-TTLRKLKVLDLSRNELKSIPESLNNMKELTSINFSSNQIEDMPKIG--DL 494
K++ +N+ +L+ L LDLS NEL IP +L + +L S+N +SN+I L
Sbjct: 343 KLKSIPKNVFLSLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKITGCRTFYHISL 402
Query: 495 PNLIIIDISNNKLKSFLDVESANLPHLTDLKLKSNLIESI 614
+L I+ +S N L S +E N+P L L ++ N I +
Sbjct: 403 SHLQILVLSRNHLTSLSGLE--NVPSLEKLDIRDNSITDV 440
Score = 28.7 bits (61), Expect = 0.78
Identities = 22/99 (22%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Frame = +3
Query: 258 LHAIPDEI-KNLINLQSLLMFGNKIEVFNENITTLRKLKVLDLSRNELKSIPESLN-NMK 431
L +IP + +L +L SL + GN++ + L +L L+L+ N++ + ++
Sbjct: 344 LKSIPKNVFLSLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKITGCRTFYHISLS 403
Query: 432 ELTSINFSSNQIEDMPKIGDLPNLIIIDISNNKLKSFLD 548
L + S N + + + ++P+L +DI +N + ++
Sbjct: 404 HLQILVLSRNHLTSLSGLENVPSLEKLDIRDNSITDVVE 442
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 48.8 bits (111), Expect = 7e-07
Identities = 30/112 (26%), Positives = 58/112 (51%)
Frame = +3
Query: 279 IKNLINLQSLLMFGNKIEVFNENITTLRKLKVLDLSRNELKSIPESLNNMKELTSINFSS 458
+ +LI+L+ L + N + + I L L L N +K + + +N+ L + +
Sbjct: 686 LSSLIHLRELKVDSNHLWSL-DGIQHLDGLLKLSACNNRIKELSFTNSNLHRLEELLLGN 744
Query: 459 NQIEDMPKIGDLPNLIIIDISNNKLKSFLDVESANLPHLTDLKLKSNLIESI 614
N+IE++ +I L NL+++ + NNKL + S + HL L++ +N I +
Sbjct: 745 NEIEEIEEISSLQNLMVLQLDNNKLTNL--KASQPMIHLRILRISNNAIHQL 794
Score = 43.2 bits (97), Expect = 3e-05
Identities = 31/115 (26%), Positives = 59/115 (51%)
Frame = +3
Query: 273 DEIKNLINLQSLLMFGNKIEVFNENITTLRKLKVLDLSRNELKSIPESLNNMKELTSINF 452
D I++L L L N+I+ + + L +L+ L L NE++ I E +++++ L +
Sbjct: 706 DGIQHLDGLLKLSACNNRIKELSFTNSNLHRLEELLLGNNEIEEI-EEISSLQNLMVLQL 764
Query: 453 SSNQIEDMPKIGDLPNLIIIDISNNKLKSFLDVESANLPHLTDLKLKSNLIESIP 617
+N++ ++ + +L I+ ISNN + L+V+ PHL L + N P
Sbjct: 765 DNNKLTNLKASQPMIHLRILRISNNAIHQ-LEVD--QFPHLRTLYMDLNRFNRPP 816
Score = 36.7 bits (81), Expect = 0.003
Identities = 28/107 (26%), Positives = 54/107 (50%)
Frame = +3
Query: 294 NLQSLLMFGNKIEVFNENITTLRKLKVLDLSRNELKSIPESLNNMKELTSINFSSNQIED 473
+++ L + GN+I T+R L ++ N L S+ S +N+ L ++ S NQ+ED
Sbjct: 627 SIEELTLEGNEIAYLTGCPVTIRDLNAVE---NRLSSLT-SFSNLLNLQYLDISYNQLED 682
Query: 474 MPKIGDLPNLIIIDISNNKLKSFLDVESANLPHLTDLKLKSNLIESI 614
+ + L +L + + +N L S ++ +L L L +N I+ +
Sbjct: 683 LTGLSSLIHLRELKVDSNHLWSLDGIQ--HLDGLLKLSACNNRIKEL 727
Score = 26.6 bits (56), Expect = 3.1
Identities = 21/103 (20%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Frame = +3
Query: 270 PDEIKNLINLQSLLMFGNKIEVFNENITTLRKLKVLDLSRNELKSIPESLNNMKELTSIN 449
P +I+ L L + E N I ++ L LS N ++ + + + +
Sbjct: 815 PPDIRRLKRLVNFSFRTQDPEASNFVIQPSLDIRNLYLSNNTFVTL-DCKHMFLGVRYLE 873
Query: 450 FSSNQIEDMPKI--GDLPNLIIIDISNNKLKSFLDVESANLPH 572
++ Q++++PK +PNL ++D+S+N + ++ + H
Sbjct: 874 LANVQLKEVPKYIATSMPNLRVLDLSHNYISDIESLKPLQMIH 916
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 47.2 bits (107), Expect = 2e-06
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Frame = +3
Query: 375 LDLSRNELKSIPESLNNMKELTSINFSSNQIEDMP-KIGDLPNLIIIDISNNKLKSFLDV 551
LDL L+++ L LT + + N + +P +IG L NL+I+D S N +K+ +
Sbjct: 163 LDLGGIGLRNVSTDLFKFSFLTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKT-IPP 221
Query: 552 ESANLPHLTDLKLKSNLIESIPSCIGT 632
E L L ++ L N+I IP+ +GT
Sbjct: 222 ELGLLTELREVLLFDNMISVIPAELGT 248
Score = 40.3 bits (90), Expect = 2e-04
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +3
Query: 297 LQSLLMFGNKIEVFNENITTLRKLKVLDLSRNELKSIPESLNNMKELTSINFSSNQIEDM 476
L L + N + I L+ L +LD S N +K+IP L + EL + N I +
Sbjct: 183 LTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELGLLTELREVLLFDNMISVI 242
Query: 477 P-KIGDLPNLIIIDISNNKLK 536
P ++G L L I+ I N L+
Sbjct: 243 PAELGTLFQLKILGIEGNPLQ 263
Score = 36.3 bits (80), Expect = 0.004
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +3
Query: 246 SDTCLHAIPDEIKNLINLQSLLMFGNKIEVFNENITTLRKLKVLDLSRNELKSI 407
S + IP E+ L L+ +L+F N I V + TL +LK+L + N L+ +
Sbjct: 212 SGNSIKTIPPELGLLTELREVLLFDNMISVIPAELGTLFQLKILGIEGNPLQDV 265
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 46.0 bits (104), Expect = 5e-06
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Frame = +3
Query: 294 NLQSLLMFGNKIEVFNENITTLRKLKVLDLSRNELKSIPESLNNMKELTSINFSSNQIED 473
+L+ L + NK+ + L L LDLS N + P + + +L ++NFS N +
Sbjct: 503 SLKELNIANNKLFFLPHSTRYLVNLTYLDLSYNNFVTFPLIITELSQLETLNFSHNLLSQ 562
Query: 474 M-PKIGDLPNLIIIDISNNKLKSFLDVESANLPHLTDLKLKSNLIESIPS 620
+ KIG L L + + N L + L E L +L + L N I +I S
Sbjct: 563 ISSKIGSLVKLKHLYLQFNDLSNRLPQEIGLLKNLETIDLSYNAITNIAS 612
Score = 41.9 bits (94), Expect = 8e-05
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Frame = +3
Query: 279 IKNLINLQSLLMFGNKIEVFNENITTLRKLKVLDLSRNELKS-IPESLNNMKELTSINFS 455
I L L++L N + + I +L KLK L L N+L + +P+ + +K L +I+ S
Sbjct: 544 ITELSQLETLNFSHNLLSQISSKIGSLVKLKHLYLQFNDLSNRLPQEIGLLKNLETIDLS 603
Query: 456 SNQIEDMPKIGDLPNLIIIDISNNKLKSF 542
N I ++ + + P L I+++ N L +
Sbjct: 604 YNAITNIASLSECPKLNSINVACNLLSFY 632
Score = 38.3 bits (85), Expect = 0.001
Identities = 22/69 (31%), Positives = 35/69 (50%)
Frame = +3
Query: 264 AIPDEIKNLINLQSLLMFGNKIEVFNENITTLRKLKVLDLSRNELKSIPESLNNMKELTS 443
+I D I + NL+ L ++ + N+ L+ L LDL N +K PE + + L
Sbjct: 697 SISDAISAMQNLKYLSCTNCEMSYVSPNLGKLKHLVHLDLHANNIKIFPEEVWQVSSLKV 756
Query: 444 INFSSNQIE 470
+N SSN +E
Sbjct: 757 VNLSSNILE 765
Score = 33.1 bits (72), Expect = 0.036
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Frame = +3
Query: 363 KLKVLDLSRNELKSIPESLNNMKELTSINFSSNQIEDMPKI---GDLPN-LIIIDISNNK 530
KLK LD+S N + + +++L +N S N I ++ + G N L ++I+NNK
Sbjct: 454 KLKRLDISNNLRSPRGKPITALRQLEVLNMSRNDIYELDPLIFSGLSRNSLKELNIANNK 513
Query: 531 LKSFLDVESANLPHLTDLKLKSNLIESIPSCI 626
L FL + L +LT L L N + P I
Sbjct: 514 L-FFLPHSTRYLVNLTYLDLSYNNFVTFPLII 544
Score = 32.3 bits (70), Expect = 0.063
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = +3
Query: 309 LMFGNKIEVFNENITTLRKLKVLDLSRNELKSIPESLNNMKELTSINFSSNQIEDMPKIG 488
L + E+ ++ LK L +S NEL ++ S L ++ + N++ PK
Sbjct: 837 LSYNYLTEIPSKFFQNFSDLKHLFVSGNELANLSISSTAQVLLETLYANGNRLSSFPKNE 896
Query: 489 DL-PNLIIIDISNNKLKSFLDVESANLPHLTDL 584
L +L +DIS N L++ L VE A LT L
Sbjct: 897 ALSKSLRFLDISTNNLQN-LAVEKAEKKSLTKL 928
Score = 32.3 bits (70), Expect = 0.063
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Frame = +3
Query: 297 LQSLLMFGNKIEVFNENITTLRKLKVLDLSRNELKSI------PESLNNMKELTSINFSS 458
L++L GN++ F +N + L+ LD+S N L+++ +SL + +L +N S
Sbjct: 879 LETLYANGNRLSSFPKNEALSKSLRFLDISTNNLQNLAVEKAEKKSLTKLPQLEYLNLSG 938
Query: 459 N 461
N
Sbjct: 939 N 939
Score = 31.1 bits (67), Expect = 0.15
Identities = 33/120 (27%), Positives = 54/120 (45%)
Frame = +3
Query: 267 IPDEIKNLINLQSLLMFGNKIEVFNENITTLRKLKVLDLSRNELKSIPESLNNMKELTSI 446
+P EI L NL+++ + N I +++ KL ++++ N L S E N T I
Sbjct: 587 LPQEIGLLKNLETIDLSYNAITNI-ASLSECPKLNSINVACN-LLSFYEYSN--PSATFI 642
Query: 447 NFSSNQIEDMPKIGDLPNLIIIDISNNKLKSFLDVESANLPHLTDLKLKSNLIESIPSCI 626
+FS + + NL+ DIS+ KL D L ++ +K+ N SI I
Sbjct: 643 DFSFCPLTTIDPAFSYSNLVYFDISHAKLIGLKDSVIETLVNVETVKVNYNHFTSISDAI 702
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 42.7 bits (96), Expect = 4e-05
Identities = 28/94 (29%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Frame = +3
Query: 297 LQSLLMFGNKIEVFNENITTLRKLKVLDLSRNELKSIPESLNNMKELTSINFSSNQIEDM 476
L L ++ N I V EN+ ++ L LDLS N +K+I ++N++K L ++ F N+I +
Sbjct: 84 LTELDLYDNLI-VRIENLDNVKNLTYLDLSFNNIKTI-RNINHLKGLENLFFVQNRIRRI 141
Query: 477 PKIGDLPNLIIIDISNNKLKSFLDVES-ANLPHL 575
+ L L +++ NK++ ++++ NL L
Sbjct: 142 ENLEGLDRLTNLELGGNKIRVIENLDTLVNLEKL 175
Score = 41.1 bits (92), Expect = 1e-04
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Frame = +3
Query: 273 DEIKNLINLQSLLMFGNKIEVFNENITTLRK-LKVLDLSRNELKSIPESLNNMKELTSIN 449
+ + L L L + N+I F EN+ L L+ L +S N L S + ++ L ++
Sbjct: 186 ENFEKLQKLSLLSIQSNRITQF-ENLACLSHCLRELYVSHNGLTSF-SGIEVLENLEILD 243
Query: 450 FSSNQIEDMPKIGDLPNLIIIDISNNKLKSFLDVE 554
S+N I+ + + L NL+ + SNN+L SF ++E
Sbjct: 244 VSNNMIKHLSYLAGLKNLVELWASNNELSSFQEIE 278
>SPBC336.08 |spc24||spindle pole body protein
Spc24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 198
Score = 29.1 bits (62), Expect = 0.59
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 330 EVFNENITTLRKLKVLDLSRNELKSIPESLNNMKE-LTSINFSSNQIEDMPKIGDLPNLI 506
E+ + R K+L+++ NE+ S+ L MKE L + N ED+ + + N++
Sbjct: 79 EILSREKEKFRIAKLLNITENEIMSLESQLQKMKEQLLQLEERENTSEDICQSEENANML 138
>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 171
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 330 EVFNENITTLRKLKVLDLSRNELKSIPESLNNMKELTSINFS 455
++ N N + + + V+D S+ ELKS +L+++K L I +S
Sbjct: 68 DLLNVNKSYILERSVIDPSKQELKSETFNLDHVKILRVIEYS 109
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 191 FRDSFRYSGSRQLNFVTILLFCGHNFRPSTHF 96
FRD + SG + LLF H+++PS F
Sbjct: 1126 FRDMDQLSGGEKTMAALALLFAIHSYQPSPFF 1157
>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 564 LPHLTDLKLKSNLIESIPSCIGTKTFITQE 653
LP + DLK K NLIE++ + K ++ E
Sbjct: 100 LPGIDDLKTKINLIETLRTITDGKIYVEVE 129
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 26.2 bits (55), Expect = 4.2
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +3
Query: 258 LHAIPDEIKNLINLQSLLMFGNKIEVFNENITTL---RKLKVLDLSRNELKSIPESLNNM 428
L D I+NL +Q+ L GN E+F E RK KV ++ ++L SL++
Sbjct: 378 LQEFTDAIRNLALIQNKLERGNLNELFAEFFADKLHNRKRKVTEILLHQLGFKGISLSHG 437
Query: 429 KEL 437
KE+
Sbjct: 438 KEI 440
>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
Sec14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 286
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 525 NKLKSFLDVESANLPHLTDLKLKSNLIESIPS 620
N +K FLD + H+ KS L+E IP+
Sbjct: 221 NLIKGFLDEATVKKIHILGSNYKSALLEQIPA 252
>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 564 LPHLTDLKLKSNLIESIPSCIGTKTFITQE 653
LP + DLK K NLIE++ + K ++ E
Sbjct: 100 LPGIDDLKTKINLIETLRTITDGKIYVEVE 129
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 114 EVVTAKEENRHEIKLAGAAISKRISEH 194
E VTA E H+ SKR+S+H
Sbjct: 448 EAVTAPTETAHDFSKETTTASKRVSKH 474
>SPBC1861.08c |||U2 snRNP-associated protein Lea1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 25.8 bits (54), Expect = 5.5
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +3
Query: 375 LDLSRNELKSIPESLNNMKEL-TSINFSSNQIEDMPKIGDLPNLIIIDISNNKLKSFLDV 551
LDL ++ I E+L ++++ +I+F+ N I + + L + NN++ +
Sbjct: 23 LDLRWYQIPII-ENLGVLRDVHDAIDFTDNDIRYLGNFPRMKRLQTLLCGNNRITAIAPD 81
Query: 552 ESANLPHLTDLKLKSNLIESI 614
LP+L L L N ++ I
Sbjct: 82 IGKVLPNLKTLSLAQNHLQEI 102
>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 366 LKVLDLSRNELKSIPESLNNMKELTSINFSSNQIEDMPKIGDLPNL 503
L ++L+RN I + + + S+N +SN++ M K+ +L L
Sbjct: 320 LTTMELTRNFPNDIDVESSIVDKQYSVNSASNELRVMEKLNELDEL 365
>SPAC13A11.06 ||SPAC3H8.01|pyruvate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 571
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 357 LRKL-KVLDLSRNELKSIPESLNNMKELTSINFSSNQI 467
LRKL KVLD S K+ P N+K + +SSN+I
Sbjct: 333 LRKLLKVLDASMCHSKAAPTIGYNIKPKHAEGYSSNEI 370
>SPAC4G9.10 |arg3||ornithine carbamoyltransferase
Arg3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 25.4 bits (53), Expect = 7.3
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = +3
Query: 366 LKVLDLSRNELKSIPESLNNMKELTSINFSSNQIEDMPKIGDLPNLIIIDISNNKLKSFL 545
L + DLSR E+ + + + +K+ NF + + M + N+ +I S ++ +
Sbjct: 11 LSIRDLSRGEIVKLIDRSSEIKQAYKQNFQNRRSVQMSGLSS-QNVAMI-FSKRSTRTRV 68
Query: 546 DVESA 560
VESA
Sbjct: 69 SVESA 73
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -1
Query: 454 LKLILVSSFMLFKLSGMLFNSFLDKSRTFNFRSVVMFSL 338
L LIL F+ + N++L + TF+F S +M+ +
Sbjct: 442 LSLILTGVFLFASTTAKTSNAYLGWNCTFSFFSDIMYGV 480
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 350 NHTSKVKSPRFIKKRIKKHPRELEQHERTNEYQFQLKSNRR 472
N+ + +K PR K+ +K EL E+ E LKS RR
Sbjct: 169 NYFTDIK-PRSTKEEREKIANELAHQEKQKERNKLLKSGRR 208
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 25.0 bits (52), Expect = 9.6
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = +3
Query: 363 KLKVLDLSRNELKSIPESLNNMKELTSI----NFSSNQIEDMPKIGDLPNLIIIDISNNK 530
K K DLS+ E++ + E N KELT + F +++ LI + N K
Sbjct: 576 KKKNEDLSKLEVEKVEEIANLKKELTHLAKQQEFGFKYVQEFSNEDLQGKLIEANEKNYK 635
Query: 531 LKSFLDVESANLPHLTD 581
L L + + +T+
Sbjct: 636 LTQLLKTQKEDADFITN 652
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 9.6
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +3
Query: 339 NENITTLRKLKVLDLSRNELKSIPES--LNNMKELTSINFSSNQIEDMPKIGDLPNLIII 512
NEN+ L + S E+ S ES L ++ + S +D I ++PNL+
Sbjct: 154 NENVLIQHSLNLAP-SDKEISSTEESEQLCYKEQESEKELYSKDNDDSLDILNVPNLVND 212
Query: 513 DISNN 527
DI+NN
Sbjct: 213 DIANN 217
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = -1
Query: 427 MLFKLSGMLFNSFLDKSRTFNFRSVVMFSLKTSILFPNINKLWRLIKFLI 278
+L ++ + + +DKSR N +++ + ILF + W+ + LI
Sbjct: 467 LLERIGELTQSHIVDKSRLNNTPDILILLEEVDILFQDDRGFWQAVSTLI 516
>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 674
Score = 25.0 bits (52), Expect = 9.6
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 369 KVLDLSRNELKSIPESLNNMKELTSINFSSNQIEDMPKI 485
KVLD S NE +S E+ N+ ELT + + E+M K+
Sbjct: 367 KVLDDSLNEFQSPAENTNDKIELTESMWPLPE-EEMSKL 404
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 25.0 bits (52), Expect = 9.6
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = +3
Query: 399 KSIPESLNNMKELTSINFSSNQIEDMPKIGDLPNLIIIDISNNKLKSFLD--VESANLPH 572
K + LNN+ + T + ED+ D+PNL+ +KL+ F + + A+L
Sbjct: 89 KQMISQLNNLVKETDV-IEDMLREDLELDSDMPNLLRAHYKLSKLREFREEALYQASLEG 147
Query: 573 LTDLKL 590
+DL +
Sbjct: 148 QSDLPI 153
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,375
Number of Sequences: 5004
Number of extensions: 51030
Number of successful extensions: 192
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -