Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11n18
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1201 - 35380338-35380496,35381200-35381322,35381521-353820...    29   3.5  
07_01_0373 + 2783596-2784933                                           28   6.1  
04_04_1110 + 30973202-30973870                                         28   6.1  
07_01_0901 + 7578143-7578327,7578430-7578455,7578576-7578606,757...    28   8.0  

>01_06_1201 -
           35380338-35380496,35381200-35381322,35381521-35382066,
           35382285-35382392,35382695-35383225,35383614-35383743,
           35384225-35385081,35385303-35385408,35387119-35387230,
           35389255-35389347,35389723-35389771,35389859-35389897,
           35390671-35390757,35391613-35391873,35391957-35392166,
           35392413-35393507
          Length = 1501

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 317 PRSVSCESRRDVLEPAGEGSSNRAAQASSISSWDGLVGTGPTPA 186
           P  V  ++    +  AGEG  + A  +SS +S D L+   P+P+
Sbjct: 72  PAMVGADAESSAVVDAGEGHGDLALDSSSAASTDPLLHPPPSPS 115


>07_01_0373 + 2783596-2784933
          Length = 445

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/39 (46%), Positives = 19/39 (48%)
 Frame = -1

Query: 299 ESRRDVLEPAGEGSSNRAAQASSISSWDGLVGTGPTPAP 183
           ESR    E A E SS  AA AS  +  D    T PT AP
Sbjct: 179 ESRVKARERARERSSAAAAAASKDAGDDAATPTAPTAAP 217


>04_04_1110 + 30973202-30973870
          Length = 222

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +1

Query: 187 AGVGPVPTRPSQLEMEEACAALFDEPSPAGSSTSRRDS 300
           A   PVP RP+ + +++  A L DE S  GSS+S  D+
Sbjct: 167 AVAAPVPRRPAVVSVKKEVARL-DEQSDTGSSSSVVDA 203


>07_01_0901 +
           7578143-7578327,7578430-7578455,7578576-7578606,
           7578690-7578777,7578889-7579034,7579641-7579685,
           7579776-7579879,7579976-7580112,7580553-7580654,
           7581375-7581587
          Length = 358

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +1

Query: 187 AGVGPVPTRPSQLEMEEACAALFDEPSPAGSSTSRRDSQLTDRGYFDVKFY 339
           AG GP P R + L + ++      + SPAG   SRR  +     Y  V FY
Sbjct: 7   AGEGPWPRRAADLGVAQS------QRSPAGGKKSRRGPRSRSSQYRGVTFY 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,013,653
Number of Sequences: 37544
Number of extensions: 235820
Number of successful extensions: 593
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)