Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11n17
(689 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 36 0.007
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 35 0.010
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 31 0.12
SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|c... 29 0.63
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos... 29 0.84
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 28 1.1
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 28 1.5
SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M... 27 1.9
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 27 2.6
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 27 3.4
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc... 26 4.5
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces... 26 4.5
SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 25 7.8
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy... 25 7.8
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 35.5 bits (78), Expect = 0.007
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 19/119 (15%)
Frame = +1
Query: 61 MWYLRAEND-----ERVLYITPEKREVIIGRSPDKQICSFPIIDDSSLSRRHASLTL--- 216
MW + AE D R+L+ I+GR+ +I S+S+RHA T+
Sbjct: 1 MWIIEAEGDILKGKSRILF----PGTYIVGRNVSDDSSHIQVIS-KSISKRHARFTILTP 55
Query: 217 ------SSNNCLF-VQDLDSKYGTFINDCTEKLTTKVQLKSDDIVKLGK----LNCIWR 360
+ C F V+DLD+K+GT +N+ + D ++LGK +N WR
Sbjct: 56 SEKDYFTGGPCEFEVKDLDTKFGTKVNEKVVGQNGDSYKEKDLKIQLGKCPFTINAYWR 114
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 35.1 bits (77), Expect = 0.010
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +1
Query: 187 LSRRHASLTLSSNNCLFVQDLDSKYGTFINDC----TEKLTTKVQLKSDDIVKLG 339
+SRRHA + NN ++QD+ S GTF+N K + + ++DI++LG
Sbjct: 84 VSRRHAQI-FYENNTWYIQDMGSSSGTFLNHVRLSPPSKTSKPYPISNNDILQLG 137
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 31.5 bits (68), Expect = 0.12
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Frame = +1
Query: 121 EVIIGR-SPDKQICSFPIIDDSSLSRRHASLTLSSNNCLFVQDLDSKYGTFINDCTEKLT 297
+V +GR + + C + D ++SR+HA + S N F + K G F++ +
Sbjct: 38 QVTMGRKASNSSDCDVHLGDTKAISRQHAKIFYSFPNQRFEISVMGKNGAFVDGEFVERG 97
Query: 298 TKVQLKSDDIVKLGKLN 348
V L+S V++G+++
Sbjct: 98 KSVPLRSGTRVQIGQIS 114
>SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 29.1 bits (62), Expect = 0.63
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = +1
Query: 322 DIVKLGKLNCIWRVYNLELVTCTS--TF--EKENLLHLKSILDKIGGQLKNE 465
D K+G N +++++ LE++ + +F EK+ LL L + + +GG +NE
Sbjct: 2 DFNKIGDENVVFQIFKLEMLIMSEFPSFIEEKDKLLCLNVLANLLGGIFENE 53
>SPAC1783.04c |hst4||Sir2 family histone deacetylase
Hst4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 28.7 bits (61), Expect = 0.84
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -1
Query: 245 SCTNKQLFEDSVKEACRLLSDESSIIGKLHICLSGLRPIITSLF 114
+C+ K+LF+ SV + ++ ++I KLH+ + RP LF
Sbjct: 94 NCSGKELFDGSVYRDLKSVNIFHAMIRKLHMLSNNARPTDFHLF 137
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = -1
Query: 446 PILSRIDLRWRRFSFSNVDVHVTSSRL*TRQMQLSFPNFTISSDLS*TLVVSFSVQSLMN 267
P+L +D R F NVD + + L T Q+ F +T +++L L+ ++L
Sbjct: 321 PVLQEMDKEHARIDFDNVDSRLDPNILTTFPFQVQF--YTSNANLKHPLISPIFTENLGG 378
Query: 266 VP 261
+P
Sbjct: 379 LP 380
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +1
Query: 376 LVTCTSTFEKENLLHLKSILDKIGGQLKNEWD 471
L+ T+ F + LLHL S L +I K+EW+
Sbjct: 1138 LIDSTTGFTVDQLLHLHSFLYQIIWNTKSEWN 1169
>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 214
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = -1
Query: 221 EDSVKEAC-RLLSDESSIIGKLHICLSGLRPIITSLFSGVMYNTLSSFSALKYHI 60
E+SV ++C RLL++ +IG++ I ++G+ L +G + + S+ + H+
Sbjct: 27 ENSVIQSCQRLLNEIDEVIGQMEIEITGIPTSERGLVNGRIRSYRSTLEEWRRHL 81
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 148 KQICSFPIIDDSSLSRRHASLTLSSNNCLFVQDL 249
K++ SF + LSRRH L S+N + +Q L
Sbjct: 794 KRVRSFQAVAHGFLSRRHTEYELLSSNIIKLQSL 827
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +1
Query: 478 CGYLTMPELTLTIEVVFALVQGSYIVTTEFWNKCLESIHNLSIPPDPQLFT-PE 636
C +L P + T + + ++ G +VT ++ N CL++ H + + +P L PE
Sbjct: 697 CTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKT-HEI-VDEEPYLLNDPE 748
>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 518
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 430 ILDKIGGQLKNEWDDSCGYL 489
I+D GG L EW+D C L
Sbjct: 62 IIDADGGMLAMEWEDKCTQL 81
>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 26.2 bits (55), Expect = 4.5
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Frame = +1
Query: 319 DDIVKLGKLNCIWRVYNLE--LVTCTSTFEK---ENLLHLKSILDKIGGQLKNEWDDSCG 483
DD++++ K+ R +LE V CT + K EN+ L+ +L KI +++
Sbjct: 56 DDLIEVKKIGAKEREEHLEKIYVICTRHYAKRISENVASLEELLLKIFNGPRSD------ 109
Query: 484 YLTMPELTLTIEVVFALVQGSYIVTTEFWNK 576
EL LTI ++ S E W K
Sbjct: 110 ----KELILTIRIMCTFCLASVFQVEELWTK 136
>SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 180
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = -3
Query: 675 NEN-NFSVRCCFYNF--RSK*LRVWWN 604
NE+ +F V+CC Y F R++ L +W N
Sbjct: 100 NEHFSFPVKCCAYQFILRNRFLLIWCN 126
>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/56 (25%), Positives = 27/56 (48%)
Frame = +1
Query: 82 NDERVLYITPEKREVIIGRSPDKQICSFPIIDDSSLSRRHASLTLSSNNCLFVQDL 249
+++ +L+ T ++ + + + +CSF + S SL+ SSN C Q L
Sbjct: 100 HEKEILHRTCKRYRIPLNIIDNPSLCSFTLPATWSEPPLQISLSTSSNGCRLAQRL 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,894,784
Number of Sequences: 5004
Number of extensions: 60348
Number of successful extensions: 156
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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