Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11n17
(689 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0208 - 14318485-14319283,14319704-14320170 44 1e-04
06_01_1137 + 9412230-9412378,9412549-9412634,9413417-9413496,941... 42 6e-04
11_01_0450 - 3487464-3487844,3487883-3488268,3488883-3489033,348... 41 8e-04
10_08_0438 + 17919355-17919391,17919491-17919544,17919928-179201... 39 0.004
08_02_0853 - 21898293-21899564,21899910-21899964,21900079-21901034 30 1.5
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 30 1.5
02_03_0305 + 17527906-17528148,17528986-17529051,17529624-17530808 29 3.5
08_01_0170 - 1440908-1441072,1441539-1441581,1442155-1442619,144... 29 4.6
11_02_0146 + 8779249-8780130,8780815-8780970,8781070-8781265,878... 28 6.1
11_01_0154 + 1281434-1281725,1281923-1281987,1282112-1282175,128... 28 8.0
07_03_1096 + 23931862-23931931,23932406-23932549,23932888-239329... 28 8.0
04_04_1218 - 31822915-31823141,31823418-31823832,31824090-318244... 28 8.0
>08_02_0208 - 14318485-14319283,14319704-14320170
Length = 421
Score = 44.0 bits (99), Expect = 1e-04
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +1
Query: 61 MWYLRAENDERVL-YITPEKREVIIGRSPDKQICSFPIIDDSSLSRRHASLTLSSNNCLF 237
++YL D V+ I EK+ I GR C F ++D S+SR+HA++ N ++
Sbjct: 102 VYYLEVLKDGDVIDRINLEKKRHIFGRQVPA--CDF-VLDHQSVSRQHAAVVPHRNGSIY 158
Query: 238 VQDLDSKYGTFINDCTEKLT 297
V DL S +GTF+ E+LT
Sbjct: 159 VIDLGSVHGTFV--ANERLT 176
>06_01_1137 +
9412230-9412378,9412549-9412634,9413417-9413496,
9413826-9413881,9414038-9414086,9414692-9414841,
9414993-9415088,9415442-9415555,9415655-9415785,
9416171-9416408,9416603-9416656,9417100-9417117,
9417906-9418722,9418797-9418846
Length = 695
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/63 (30%), Positives = 37/63 (58%)
Frame = +1
Query: 154 ICSFPIIDDSSLSRRHASLTLSSNNCLFVQDLDSKYGTFINDCTEKLTTKVQLKSDDIVK 333
+C F +++ ++SR HA L ++ +F+ DL S +G+FIN K V++ D+++
Sbjct: 63 LCDF-VLEHPTISRFHAVLQFRNDGEVFLYDLGSTHGSFINKTQVKKKIYVEIHVGDVIR 121
Query: 334 LGK 342
G+
Sbjct: 122 FGQ 124
>11_01_0450 -
3487464-3487844,3487883-3488268,3488883-3489033,
3489132-3491102,3492090-3492149,3492240-3492436,
3492678-3492963
Length = 1143
Score = 41.1 bits (92), Expect = 8e-04
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Frame = +1
Query: 112 EKREVIIGRSPDKQICSFPIIDDSSLSRRHASL-TLSSNNCLFVQDLDSKYGTFINDCTE 288
E V+ GR P+ + ++D S+SR H + + + V DL S +GT+I+
Sbjct: 51 EDPPVMFGRHPECHV----LVDHPSVSRFHLEVRSRRRQRRITVTDLSSVHGTWISGRRI 106
Query: 289 KLTTKVQLKSDDIVKLGKLNCIWRVYNLELVTCTSTFEKENLL 417
T V+L + D+++LG R Y L ++ F+ E+LL
Sbjct: 107 PPNTPVELTAGDVLRLGSSR---REYRLHWLSLPEAFDMEDLL 146
>10_08_0438 +
17919355-17919391,17919491-17919544,17919928-17920186,
17920396-17920484,17920645-17920775,17920900-17920946,
17921029-17921137,17921217-17921303,17921521-17921692,
17921837-17922309,17922402-17922463,17922537-17922639,
17923535-17923636
Length = 574
Score = 38.7 bits (86), Expect = 0.004
Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 20/181 (11%)
Frame = +1
Query: 157 CSFPIIDDSSLSRRHASLTLSSN-----------NCLFVQDLD-SKYGTFINDCTEKLTT 300
C + D+S+SR HA + + N +V+ +D SKYGTF N +
Sbjct: 32 CDVIVQTDTSISRVHAEIVVEKMVAWDPQSGAPANPSYVRVVDRSKYGTFFNKVQGTQGS 91
Query: 301 KVQLKSD------DIVKLGKLNCIWRVYNLELVTCTSTFEKENLLH-LKSILDKIGGQLK 459
++ D D V G N +R+ + +V + + L++++ IG
Sbjct: 92 RLHKDEDAMLADGDTVTFGTGNATFRLSFVPIVVFFHGKKSGRISPCLQAVMTSIGAYAT 151
Query: 460 NEWDDSCGYLTMPE-LTLTIEVVFALVQGSYIVTTEFWNKCLESIHNLSIPPDPQLFTPE 636
+W D C ++ + E +LT E++ A++ IV +++ E + +P Q + P+
Sbjct: 152 RKWSDECTHVLVDESCSLTPELLDAVLAKKQIVLGDWFKVMAEKNIHTEMPSSTQ-YIPK 210
Query: 637 I 639
+
Sbjct: 211 L 211
>08_02_0853 - 21898293-21899564,21899910-21899964,21900079-21901034
Length = 760
Score = 30.3 bits (65), Expect = 1.5
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = +1
Query: 304 VQLKSDDIVKLGKL-NCIWRVYNLELVTCTSTFEKENLLHLKSILDKIGGQLKN-EWDDS 477
V L SD + GKL NC ++Y+L S+F K LL + I D + ++ N EW+ S
Sbjct: 144 VPLGSDRL--FGKLVNCAGQLYSL------SSFRK--LLTIDVIDDALHAKILNIEWESS 193
Query: 478 CGYLTMPELTLTIEVVFALVQGSY 549
CG+ P + + +F ++ Y
Sbjct: 194 CGHNFEPYIVESCGKLFVVLASLY 217
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +1
Query: 178 DSSLSRRHASLTLSSNNCLFVQDLDSKYGTFINDCTEKLTT 300
DS +S +T S+N L ++ + KY + IND T+ L T
Sbjct: 2397 DSEISFLRQEITRSTNELLTTEESNKKYSSQINDFTKWLET 2437
>02_03_0305 + 17527906-17528148,17528986-17529051,17529624-17530808
Length = 497
Score = 29.1 bits (62), Expect = 3.5
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +1
Query: 142 PDKQICSFPIIDDSSLSRRHASLTLSSNNCLFVQDLD---SKYGTFINDCTEKLTTKVQL 312
P K C P I D L H SLTL+S C D + GT I++ TE T ++
Sbjct: 341 PSKSSCFAPPISDEGLLTCHLSLTLAS--CSMDVDKSQGLNANGTTIDNPTEAATATME- 397
Query: 313 KSDDI 327
K D I
Sbjct: 398 KDDTI 402
>08_01_0170 -
1440908-1441072,1441539-1441581,1442155-1442619,
1442714-1444149
Length = 702
Score = 28.7 bits (61), Expect = 4.6
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Frame = +1
Query: 100 YITPEKREVIIGR-SPDKQICSFPIID-DSSLSRRHASLTLSSNNCLF-----VQDLDSK 258
Y+ PE VI G+ S + + SF I+ + + RR SL + NNCLF V DL +
Sbjct: 548 YLDPEC--VITGKASAESDVYSFGIVLLEVACGRRPISLQDTQNNCLFRLVEWVWDLYGQ 605
Query: 259 YGTFINDCTEKLTTKVQLKSDDIV 330
G +N E+L + S + V
Sbjct: 606 -GAVLNAADERLNNEYDTTSMECV 628
>11_02_0146 +
8779249-8780130,8780815-8780970,8781070-8781265,
8781574-8781599
Length = 419
Score = 28.3 bits (60), Expect = 6.1
Identities = 21/69 (30%), Positives = 29/69 (42%)
Frame = +1
Query: 280 CTEKLTTKVQLKSDDIVKLGKLNCIWRVYNLELVTCTSTFEKENLLHLKSILDKIGGQLK 459
C + T + DD V LG L+ V NLEL+T F L ++ K+ L
Sbjct: 259 CGKYCTRFYDVHDDDCVLLGGLS---NVTNLELITSPKVFIVRKDLLMRPTFSKLKTLLL 315
Query: 460 NEWDDSCGY 486
N D G+
Sbjct: 316 NVSDADAGF 324
>11_01_0154 +
1281434-1281725,1281923-1281987,1282112-1282175,
1282303-1282449,1282583-1282677,1284358-1284465
Length = 256
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +1
Query: 124 VIIGRSPDKQICSFPIIDDSSLSRRHASLTLSSNNCLFVQDLDSKYGTFIND 279
V +GR P++ ++ +++S HA L + L V DL+S GT+IN+
Sbjct: 123 VTVGRVPEQADI---VLSVATVSGTHARLEKKEGS-LLVTDLESTNGTYINE 170
>07_03_1096 +
23931862-23931931,23932406-23932549,23932888-23932986,
23933422-23933498,23933813-23933921,23934973-23935301,
23935838-23935930
Length = 306
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +1
Query: 379 VTCTSTFEKENLLHLKSILDKIGGQL-KNEWDDSCGYLTMPELTLTIEVVFAL 534
V S+ K ++L ++ ++DKI G + K EWD G + LT++ +F L
Sbjct: 11 VASRSSHVKVDMLEVEKVVDKIQGNVPKVEWDFE-GIHYFDDGPLTVQYLFVL 62
>04_04_1218 -
31822915-31823141,31823418-31823832,31824090-31824440,
31825391-31825549,31825965-31826093,31826257-31826460,
31827200-31827412,31827547-31830912,31830999-31831150,
31831912-31832407,31832646-31833456,31833537-31834728,
31834856-31834922
Length = 2593
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 274 NDCTEKLTTKVQLKSDDIVKLGKLNCIWRVYNL 372
N CT + + L SDD+VK G L ++ NL
Sbjct: 468 NMCTRAVINRGLLHSDDLVKHGALRLVFESVNL 500
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,050,827
Number of Sequences: 37544
Number of extensions: 330500
Number of successful extensions: 707
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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