Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11n17
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7787| Best HMM Match : FHA (HMM E-Value=6e-14)                      36   0.023
SB_49819| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08)                 30   1.5  
SB_7019| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_37398| Best HMM Match : FHA (HMM E-Value=4.1)                       30   1.5  
SB_19231| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08)                29   3.6  
SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_36931| Best HMM Match : FabA (HMM E-Value=5.5)                      28   6.2  
SB_32865| Best HMM Match : AA_permease (HMM E-Value=7.7e-07)           28   8.2  
SB_8553| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  
SB_14873| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_7787| Best HMM Match : FHA (HMM E-Value=6e-14)
          Length = 379

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
 Frame = +1

Query: 130 IGRSPDKQICSFPIIDDSSLSRRHASLTLSSNN-CLFVQDLDSKYGTFINDCTEKLTTKV 306
           +GR  +  +  FP     S+ R+HA L       C  ++DL+S +GT++N+   +    V
Sbjct: 23  VGREGNDIVLQFP-----SIERQHARLMYDEGQGCYVLEDLNSGHGTYVNEMRVQ-NAAV 76

Query: 307 QLKSDDIVKLG 339
           +L   D+++ G
Sbjct: 77  RLAPGDVIRFG 87


>SB_49819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 663

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +1

Query: 295 TTKVQLKSDDIVKLGKLNCIWRVYNL---ELVTCTSTFEKENLLHLKSILDKIGGQLKNE 465
           TT +    D +  + + + +  + NL   +LV    T + E LL L S+LDK    +KN 
Sbjct: 354 TTSISQLRDHLKDMERNDVVRHLNNLNGAQLVKDVITPQSEILLKLSSLLDKESRAVKN- 412

Query: 466 WDDSCGYLTMP 498
           W + C  L +P
Sbjct: 413 WKNLCHRLKIP 423


>SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08)
          Length = 607

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 302 LVVSFSVQSLMNVPYLESKSCTNKQLFEDSVKEACR 195
           L+ +  + +L+N P L+S  C N  L +D+V + CR
Sbjct: 181 LISTDLIAALVNCPNLKSFHCVNATLLDDTVFDNCR 216


>SB_7019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 235 FVQDLDSKYGTFINDCTEKLTTKVQLKSDDIVKLG 339
           +V DLDS  GTF+N+   +     +LK  D++K G
Sbjct: 106 YVLDLDSANGTFLNNQKVEPRRYYELKERDVLKFG 140


>SB_37398| Best HMM Match : FHA (HMM E-Value=4.1)
          Length = 205

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +1

Query: 253 SKYGTFINDCTEKLTTKVQLKSDDIVKLGKLNCIWRVYNLELVTCTSTFEKENLLHLKSI 432
           SKYG  +N    +     QL + D++  G  N  +R+  ++ V  TS  +      LK  
Sbjct: 37  SKYGVSVNGTKLESGGSCQLANGDVILFGTHNSSYRLSYIQTVFATSCLDTNKKKILKKQ 96

Query: 433 LDKI 444
           + K+
Sbjct: 97  IHKL 100


>SB_19231| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 730

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 520 VVFALVQGSYIVTTEFWNKCLESIHNLSIPPDP 618
           ++  ++ G  IV  +FW+  ++S   L + PDP
Sbjct: 470 LIIQVINGHEIVGRDFWDNAVDSYVQLKLDPDP 502


>SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08)
          Length = 739

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 130 IGRSPDKQICSFPIIDDSSLSRRHASLTLSSNNC-LFVQDLDSKYGTFINDCTEKLTTKV 306
           +GR  D    +   I D  +S+ H  +         F+QDL S+ G+F+ND     ++++
Sbjct: 396 LGREKDSS--NLVRIPDLEVSKHHCRIQYDQERRQYFIQDLGSRNGSFLNDARLSQSSRI 453


>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 85   DERVLYITPEKREVIIGRSPDKQICSFPIIDDS-SLSRRHASLTLSSNN 228
            D+ V Y  P  +E++      +++  FPI+DD  S +    ++TL S +
Sbjct: 895  DKGVDYTVPSPQELVFAIGQSEKVIEFPIVDDKLSENTEKFTVTLGSTD 943



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 100  YITPEKREVIIGRSPDKQICSFPIIDDSSLSRRHA-SLTLSSNN 228
            Y  P   E++  +    ++ SFPIIDD  +        TLSS++
Sbjct: 4393 YNVPLTLEIVFDKGETSKVISFPIIDDKDVENTETFKSTLSSSD 4436


>SB_36931| Best HMM Match : FabA (HMM E-Value=5.5)
          Length = 702

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
 Frame = +1

Query: 235 FVQDLDSKYGTFINDCTEKLTTKVQLKSDDIVKLGKLNCIWRVYNLEL----VTCTSTFE 402
           F+   +SKY  F+      LT   QL   D  +   + C W   + +L     T  +  E
Sbjct: 68  FMNSTESKYKHFVELRATYLTENRQLNMYDYRENDGIECAWLRQSRDLSGKGPTGLAILE 127

Query: 403 KENLLHL--KSILDKIGGQLKNEWDDS 477
             N++H+  +++   + G   N W D+
Sbjct: 128 TLNIIHILEQTVRGYLCGSNTNRWTDN 154


>SB_32865| Best HMM Match : AA_permease (HMM E-Value=7.7e-07)
          Length = 642

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 475 SCGYLTMPELTLTIEVVFALVQGSYIVTTEFWNK 576
           S G++ +  L     VVF ++ G Y V T+ W K
Sbjct: 142 SAGFIRVAMLINVFVVVFVVLSGVYFVDTKNWTK 175


>SB_8553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 982

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 299 VVSFSVQSLMNVPYLESKSCTNKQL 225
           +VSFS Q    + YLESK C ++ L
Sbjct: 582 LVSFSYQVARGMEYLESKKCIHRDL 606


>SB_14873| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 250 DSKYGTFINDCTEKLTTKVQLKSDDIVKLGKLNCIWRVYNLELVTC 387
           D+KY  +    T+++TT      +D    G L+C  R+++L    C
Sbjct: 211 DNKYLRYFPGHTKRVTTLHMSPVEDTFVSGSLDCTLRIWDLRSPNC 256


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,466,479
Number of Sequences: 59808
Number of extensions: 412734
Number of successful extensions: 1120
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)