Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov11n17
(689 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016656-3|AAB66037.2| 515|Caenorhabditis elegans Hypothetical ... 33 0.25
Z81459-1|CAB03827.3| 731|Caenorhabditis elegans Hypothetical pr... 31 0.78
Z79604-6|CAB97241.2| 731|Caenorhabditis elegans Hypothetical pr... 31 0.78
AF047657-7|AAK18943.1| 424|Caenorhabditis elegans Hypothetical ... 31 0.78
Z81472-3|CAB03888.2| 468|Caenorhabditis elegans Hypothetical pr... 29 2.4
AC025726-32|AAY43988.1| 230|Caenorhabditis elegans Hypothetical... 29 3.1
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 29 4.1
Z99272-1|CAI79171.1| 615|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z81113-9|CAI79237.1| 615|Caenorhabditis elegans Hypothetical pr... 28 5.5
U28734-4|AAR30209.1| 477|Caenorhabditis elegans K (potassium) v... 28 5.5
U28734-3|AAR25654.1| 495|Caenorhabditis elegans K (potassium) v... 28 5.5
U28734-2|AAB52604.3| 490|Caenorhabditis elegans K (potassium) v... 28 5.5
AY150829-1|AAN75511.1| 477|Caenorhabditis elegans KVS-2 protein. 28 5.5
AF541979-1|AAO65852.1| 490|Caenorhabditis elegans KVS-1 protein. 28 5.5
Z81537-11|CAB04377.2| 329|Caenorhabditis elegans Hypothetical p... 28 7.2
Z35595-5|CAA84636.1| 952|Caenorhabditis elegans Hypothetical pr... 27 9.6
>AF016656-3|AAB66037.2| 515|Caenorhabditis elegans Hypothetical
protein C35A11.4 protein.
Length = 515
Score = 32.7 bits (71), Expect = 0.25
Identities = 23/91 (25%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = -1
Query: 305 TLVVSFSVQSLMNVPYLESKSCTNKQLFEDSV-KEACRLLSDESSIIGKLHICLSGLRPI 129
T +SFS +++N + T ++ E S+ +A ++S SSI+ + + +G RP+
Sbjct: 276 TFAMSFSGVAVINAFAFDILKDTGLKVLEASLANDAISVVSMISSIVAAVIVDRNGRRPL 335
Query: 128 ITSLFSGVMYNTLSSFSALKYHIFRT*NQIV 36
+ F+G++ L F AL + ++ N ++
Sbjct: 336 LLISFAGILVCNLIIF-ALMFTFYKFENHVL 365
>Z81459-1|CAB03827.3| 731|Caenorhabditis elegans Hypothetical
protein C03H12.1 protein.
Length = 731
Score = 31.1 bits (67), Expect = 0.78
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 202 ASLTLSSNNCLFVQDLDSKYGTFINDCTEKLTTKVQLKSD 321
+++T S NCL Q +S +F+ + TE +TTK + D
Sbjct: 483 SNITRESINCLIRQHHNSADNSFVTESTEIITTKTETPKD 522
>Z79604-6|CAB97241.2| 731|Caenorhabditis elegans Hypothetical
protein C03H12.1 protein.
Length = 731
Score = 31.1 bits (67), Expect = 0.78
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 202 ASLTLSSNNCLFVQDLDSKYGTFINDCTEKLTTKVQLKSD 321
+++T S NCL Q +S +F+ + TE +TTK + D
Sbjct: 483 SNITRESINCLIRQHHNSADNSFVTESTEIITTKTETPKD 522
>AF047657-7|AAK18943.1| 424|Caenorhabditis elegans Hypothetical
protein F37B4.7 protein.
Length = 424
Score = 31.1 bits (67), Expect = 0.78
Identities = 24/95 (25%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Frame = -1
Query: 335 NFTISSDLS*TLVVSFSVQSLMNV--PYLESKSCTNKQLFEDSVKEACRLLSDESSIIGK 162
N+T S L+ +V+ ++ + + P +E K K+L +++V+ + + D+SS +
Sbjct: 155 NWTSYSTLNIISLVAMTIAVFLALILPGVEWKEAYEKKLEDNNVQGNLKEIVDQSSYMDY 214
Query: 161 LHICLSGLRPIITSLFSGVMYNTLSSFSALKYHIF 57
L + GLR + +++ + S +SAL IF
Sbjct: 215 LRMFFVGLRHNLMAIYRNPLILKWSVWSALSSCIF 249
>Z81472-3|CAB03888.2| 468|Caenorhabditis elegans Hypothetical
protein C16D6.2 protein.
Length = 468
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 484 YLTMPELTLTIEVVFALVQGSYIVTTEFWNKCLESIHNLSI 606
Y +PEL T E +F + +T+ WN L ++ NL +
Sbjct: 280 YEYLPELIKTQEYIFGIATHCIAMTSTVWNPLLYAVLNLQL 320
>AC025726-32|AAY43988.1| 230|Caenorhabditis elegans Hypothetical
protein Y71G12B.32 protein.
Length = 230
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 322 DIVKLGKLNCIWRVYNLELVTCTSTFEKENLLHLKSILDKI 444
D++ LG L I RV +L+ C+S ENL +L S L+ +
Sbjct: 129 DVIGLGNLEQISRV-GKQLILCSSDVTDENLQNLSSKLETL 168
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 221 EDSVKEACRLLSDESSIIGKLHICLSGL 138
ED++K A LL D+ + LH+ L G+
Sbjct: 1758 EDALKSAIHLLDDQKVTLNHLHVVLEGI 1785
>Z99272-1|CAI79171.1| 615|Caenorhabditis elegans Hypothetical
protein T03F6.8 protein.
Length = 615
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 16 FVLINLQTI*FQVLKMWYLRAENDERVLYITPEKREVIIGRSPDKQICSFPIIDDSSL 189
+++ +L I V++ W AE+ +R+L + EK + I + K + FPI SL
Sbjct: 101 YLIYHLLVIRPNVVREWSDSAESVDRILLMMAEKPPMKIVKLGHKDLGGFPISGQHSL 158
>Z81113-9|CAI79237.1| 615|Caenorhabditis elegans Hypothetical
protein T03F6.8 protein.
Length = 615
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +1
Query: 16 FVLINLQTI*FQVLKMWYLRAENDERVLYITPEKREVIIGRSPDKQICSFPIIDDSSL 189
+++ +L I V++ W AE+ +R+L + EK + I + K + FPI SL
Sbjct: 101 YLIYHLLVIRPNVVREWSDSAESVDRILLMMAEKPPMKIVKLGHKDLGGFPISGQHSL 158
>U28734-4|AAR30209.1| 477|Caenorhabditis elegans K (potassium)
voltage-gated sensorychannel subunit protein 1, isoform
c protein.
Length = 477
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +1
Query: 346 NCIWRVYNL--ELVTCTSTFEKENLLHLKSILDKIGGQLKNEWDDSCGYLTMPELTLTIE 519
NC WR YN+ L + EK+ LH +S+ +I + + T +T +
Sbjct: 171 NCCWRGYNMSPSLEELVAPKEKKIELHDRSMRSRIHQFCEGDGSLFSTLFTFGSITFVLI 230
Query: 520 VVFALVQGS 546
V LV GS
Sbjct: 231 SVIGLVLGS 239
>U28734-3|AAR25654.1| 495|Caenorhabditis elegans K (potassium)
voltage-gated sensorychannel subunit protein 1, isoform
b protein.
Length = 495
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +1
Query: 346 NCIWRVYNL--ELVTCTSTFEKENLLHLKSILDKIGGQLKNEWDDSCGYLTMPELTLTIE 519
NC WR YN+ L + EK+ LH +S+ +I + + T +T +
Sbjct: 176 NCCWRGYNMSPSLEELVAPKEKKIELHDRSMRSRIHQFCEGDGSLFSTLFTFGSITFVLI 235
Query: 520 VVFALVQGS 546
V LV GS
Sbjct: 236 SVIGLVLGS 244
>U28734-2|AAB52604.3| 490|Caenorhabditis elegans K (potassium)
voltage-gated sensorychannel subunit protein 1, isoform
a protein.
Length = 490
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +1
Query: 346 NCIWRVYNL--ELVTCTSTFEKENLLHLKSILDKIGGQLKNEWDDSCGYLTMPELTLTIE 519
NC WR YN+ L + EK+ LH +S+ +I + + T +T +
Sbjct: 171 NCCWRGYNMSPSLEELVAPKEKKIELHDRSMRSRIHQFCEGDGSLFSTLFTFGSITFVLI 230
Query: 520 VVFALVQGS 546
V LV GS
Sbjct: 231 SVIGLVLGS 239
>AY150829-1|AAN75511.1| 477|Caenorhabditis elegans KVS-2 protein.
Length = 477
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +1
Query: 346 NCIWRVYNL--ELVTCTSTFEKENLLHLKSILDKIGGQLKNEWDDSCGYLTMPELTLTIE 519
NC WR YN+ L + EK+ LH +S+ +I + + T +T +
Sbjct: 171 NCCWRGYNMSPSLEELVAPKEKKIELHDRSMRSRIHQFCEGDGSLFSTLFTFGSITFVLI 230
Query: 520 VVFALVQGS 546
V LV GS
Sbjct: 231 SVIGLVLGS 239
>AF541979-1|AAO65852.1| 490|Caenorhabditis elegans KVS-1 protein.
Length = 490
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +1
Query: 346 NCIWRVYNL--ELVTCTSTFEKENLLHLKSILDKIGGQLKNEWDDSCGYLTMPELTLTIE 519
NC WR YN+ L + EK+ LH +S+ +I + + T +T +
Sbjct: 171 NCCWRGYNMSPSLEELVAPKEKKIELHDRSMRSRIHQFCEGDGSLFSTLFTFGSITFVLI 230
Query: 520 VVFALVQGS 546
V LV GS
Sbjct: 231 SVIGLVLGS 239
>Z81537-11|CAB04377.2| 329|Caenorhabditis elegans Hypothetical
protein F41D3.6 protein.
Length = 329
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +1
Query: 472 DSCGYLTMPELTLTIEVVFALVQGSYIVTTEFWNKCLESIHNLSIPPDPQLFTPEIIETT 651
D C Y + + L E F +++G Y + +++ SI P DP+ F I +T
Sbjct: 124 DCCRY-ELSDNHLADESKFLVIEGHYFQSYKYFADMKLSIKEWLKPEDPEKFRMMISKTE 182
Query: 652 SNR 660
S R
Sbjct: 183 SQR 185
>Z35595-5|CAA84636.1| 952|Caenorhabditis elegans Hypothetical
protein C01G6.5 protein.
Length = 952
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +1
Query: 172 IDDSSLSRRHASLTLSSNNCL---FVQDLDSKYGTFINDCTEKLTTKVQLKSDDIVKLGK 342
++ +SR HA + ++ + + V+D+ S+ GT+IND + LKS D +K G
Sbjct: 60 LEPQFISRCHARVHHTNQDGVEEYLVEDI-SENGTYINDRRLSKDKREILKSGDTIKFGH 118
Query: 343 LN 348
N
Sbjct: 119 KN 120
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,805,765
Number of Sequences: 27780
Number of extensions: 331194
Number of successful extensions: 819
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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