Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11n16
         (514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0275 - 23762905-23762995,23763775-23763841,23763925-237639...    71   5e-13
05_06_0106 - 25611239-25611295,25611388-25611477,25611582-256116...    29   2.2  
03_05_0089 - 20669197-20669280,20669944-20670030,20670143-206702...    28   5.1  
11_01_0144 + 1187532-1187813,1188913-1189454,1189621-1189707,119...    27   6.7  

>05_05_0275 -
           23762905-23762995,23763775-23763841,23763925-23763976,
           23764966-23765124
          Length = 122

 Score = 70.9 bits (166), Expect = 5e-13
 Identities = 38/111 (34%), Positives = 61/111 (54%)
 Frame = +2

Query: 56  MAVNSATSFVLSSILTLLIFSGMQMYKPQLILSPMTIIFGGYLGSLMFMFFVTAVGNLET 235
           MA     S  LS +L  +  S ++MY+ +   S +  I GG++ SL+F+F +T +GN + 
Sbjct: 1   MASTGGRSMALSLLLFAVTLSLLEMYRGRFASSELMTIAGGFVSSLLFLFLLTFIGNYQE 60

Query: 236 ILFGKAFQLKLPEVVLSMGISLIAAGMVHRICFTTCLIFCVITIYYMNKLS 388
                  +     VV++   +LI AG VHR+C TTC +F    +Y ++KLS
Sbjct: 61  ---ANGVKTGWGAVVVAELTALIVAGTVHRVCITTCFLFSAGFLYEVDKLS 108


>05_06_0106 -
           25611239-25611295,25611388-25611477,25611582-25611669,
           25611757-25611836,25611968-25612120,25612403-25612546,
           25612633-25612884,25612985-25613116,25613207-25613287,
           25613368-25613488,25613930-25614025,25614195-25614298,
           25614481-25614567,25614690-25614803,25614871-25614930,
           25615007-25615102,25615316-25615366,25615457-25615562,
           25615642-25615713,25616117-25616172,25616446-25616508,
           25616636-25616764
          Length = 743

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/41 (34%), Positives = 26/41 (63%)
 Frame = +2

Query: 56  MAVNSATSFVLSSILTLLIFSGMQMYKPQLILSPMTIIFGG 178
           + ++ A+SFV+  ++T + FSG+ M +  L+L+P   I  G
Sbjct: 389 LPLSDASSFVVLYLVTAVYFSGV-MVRLMLVLAPAACILSG 428


>03_05_0089 -
           20669197-20669280,20669944-20670030,20670143-20670261,
           20670838-20671076,20671159-20671215,20671564-20672195,
           20673172-20673213,20675849-20676133
          Length = 514

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 21/88 (23%), Positives = 38/88 (43%)
 Frame = +2

Query: 68  SATSFVLSSILTLLIFSGMQMYKPQLILSPMTIIFGGYLGSLMFMFFVTAVGNLETILFG 247
           +AT+  L  +LT +    + MY    ++S  T IF G+LG+L           ++   +G
Sbjct: 35  AATTIELG-LLTRIAAPAVVMYMINYLMSMSTQIFSGHLGNLELAAASLGNNGIQMFAYG 93

Query: 248 KAFQLKLPEVVLSMGISLIAAGMVHRIC 331
              Q+     +++ G  L     V  +C
Sbjct: 94  LMCQILASFAMINFG-KLGMGSAVETLC 120


>11_01_0144 +
           1187532-1187813,1188913-1189454,1189621-1189707,
           1190151-1190260,1190346-1190464,1190548-1190634,
           1191554-1191853
          Length = 508

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
 Frame = +2

Query: 95  ILTLLIFS--GMQMYKPQLILSPMTIIFGGYLGSLMFMFFVTAVGNLETILFG 247
           I+T L F   G+ ++   L+     +   G +GS++  F++   G L  + FG
Sbjct: 191 IVTYLAFLNLGIHLFLSWLLTVKFQLGLAGVMGSMVISFWIPVFGQLAFVFFG 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,228,693
Number of Sequences: 37544
Number of extensions: 257089
Number of successful extensions: 574
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)