Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11n16
         (514 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14170| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_9006| Best HMM Match : WSC (HMM E-Value=0.85)                       28   5.2  
SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1)           27   6.9  
SB_32906| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_6544| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.9  

>SB_14170| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 699

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
 Frame = -1

Query: 295 YSHR*YYFW*FQLECFTKQNCLEVTNSSYKEH--EH**TKIASEYYSHRRQYKLWFIHLH 122
           Y+ R Y     + E  + ++  + T  SY++H  E+      S+Y   RR Y     H H
Sbjct: 598 YTRRSYRQHVREYELASSKSQYKYTRRSYRQHTREYKLASSKSQYKYTRRSY-----HQH 652

Query: 121 SRKYQKG*Y*RQYEGRGTVYRHFAVFY 41
           +R+Y+      QY+     YRH A  Y
Sbjct: 653 TREYKLASSKSQYKYTRRSYRHNAREY 679


>SB_9006| Best HMM Match : WSC (HMM E-Value=0.85)
          Length = 441

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +2

Query: 266 LPEVVLSMGISLIAAGMVHRICFTT-----CLIFCVITIYYMNKLSQKKYAVV 409
           LPE + S  I +I A  +  + FTT      +I  +ITI Y N+     Y ++
Sbjct: 151 LPEFICSSIIFVIIATFITSVTFTTSTPIMSIIMRIITITYRNRHRHHHYIII 203


>SB_37888| Best HMM Match : Glycos_transf_4 (HMM E-Value=4.1)
          Length = 355

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 21/108 (19%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
 Frame = +2

Query: 95  ILTLLIFSGMQMYKP-QLILSPMTIIFGGYLGSLMFMFFVTAVGNLETILFGKAFQLKLP 271
           I   ++  G  + +P  L ++   ++ G  +   + +F   AV    T +  +   L + 
Sbjct: 128 ITQAVLLCGTTISQPLPLFITQAVLLCGTTILQPLTLFITQAVLLCGTTI-SQPLPLFIT 186

Query: 272 EVVLSMGISLIAA-GMVHRICFTTCLIFCVITIYYMNKLSQKKYAVVA 412
           + VL  G ++     ++H++C+   L +C +  YY +  +   Y + A
Sbjct: 187 QAVLLCGTTISQPLSILHKLCYCVALQYCSLCHYYTSCATVWHYNIAA 234


>SB_32906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 770

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 32  LLQIKYGKMAVNSATSFVLSSILTLLIF 115
           LLQ+K    A+ S TSFV+  ++ LL++
Sbjct: 321 LLQVKTSIYALRSRTSFVIVDLIELLLY 348


>SB_6544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +2

Query: 191 LMFMFFVTAVGNLETILFGKAFQLKLPE--VVLSMGISLIAAGMVHRICFTTCLIFCVIT 364
           ++    + +V +L  IL  K  QL++    ++ S+ +S +  G+V    FT+C I   +T
Sbjct: 102 IVLAILIISVNSLVLILVIKVKQLRVTTNYLLCSLAVSDLLTGLVSIPLFTSCNILQTLT 161

Query: 365 I 367
           I
Sbjct: 162 I 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,700,805
Number of Sequences: 59808
Number of extensions: 311736
Number of successful extensions: 741
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)