Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11n16
         (514 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73898-7|CAA98070.1|  577|Caenorhabditis elegans Hypothetical pr...    30   0.85 
AF100306-9|ABB88216.1|  105|Caenorhabditis elegans Hypothetical ...    29   2.0  
U23454-5|AAC46516.1|   84|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z66520-5|CAA91386.1|  215|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z70212-8|CAB54284.1|  320|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ...    28   4.5  
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ...    28   4.5  
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ...    28   4.5  
AF016449-2|AAG24006.1|  333|Caenorhabditis elegans Seven tm rece...    28   4.5  
U28734-3|AAR25654.1|  495|Caenorhabditis elegans K (potassium) v...    24   5.2  
U28734-2|AAB52604.3|  490|Caenorhabditis elegans K (potassium) v...    24   5.2  
U28734-4|AAR30209.1|  477|Caenorhabditis elegans K (potassium) v...    24   5.2  
Z92812-4|CAB07278.1|  313|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z92812-1|CAB07276.1|  334|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AC024849-4|AAL27260.2|  152|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z73898-7|CAA98070.1|  577|Caenorhabditis elegans Hypothetical
           protein ZK822.5a protein.
          Length = 577

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 27/108 (25%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
 Frame = +2

Query: 11  KNTSWHKLLQIKYGKMAVNSATSFVLSSILTLLIFSGMQMYKPQLILSPMTIIFGGYLGS 190
           K+T  H+    +Y  + +     F L  +L  +++  + +Y P + LSP+  I   YL  
Sbjct: 114 KSTCLHEYFIHRYNSILIRRL--FSLLFLLFTIVYMSVVLYAPSVALSPVLQINKWYL-V 170

Query: 191 LMF---MFFVTAVGNLETILFGKAFQLKLPEVVLSMGI-SLIAAGMVH 322
           L+F       T +G L+ +++  + Q     V++  G+ +LI  G+ H
Sbjct: 171 LIFGCTTTLYTCLGGLKAVVWTDSLQ----AVIMYTGVFTLIYKGLSH 214


>AF100306-9|ABB88216.1|  105|Caenorhabditis elegans Hypothetical
           protein T24C4.9 protein.
          Length = 105

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = +2

Query: 143 LILSPMTIIFGGYLGSLMFMFFVTAVGNLETILFGKAFQLKLPEVVLSMGISLIAAGMVH 322
           ++L  + ++  GYL SL  M + T    L  ++FG    + + +V+  + +  I +  + 
Sbjct: 25  MVLRSVIVLSAGYLASLALMGYFTIKMTLMCVVFGTNTLVIITDVISMIAVFTIRSDQLR 84

Query: 323 R 325
           R
Sbjct: 85  R 85


>U23454-5|AAC46516.1|   84|Caenorhabditis elegans Hypothetical
           protein C10A4.2 protein.
          Length = 84

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 332 FTTCLIFCVITIYYMNKLSQKKYAVVAPQPAAVKS 436
           F  CL+  ++ + Y+      KY V  PQPA   S
Sbjct: 8   FDICLVIALVIVNYLPDTPVSKYRVGPPQPAEYMS 42


>Z66520-5|CAA91386.1|  215|Caenorhabditis elegans Hypothetical
           protein F49E12.7 protein.
          Length = 215

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 22/71 (30%), Positives = 34/71 (47%)
 Frame = +2

Query: 89  SSILTLLIFSGMQMYKPQLILSPMTIIFGGYLGSLMFMFFVTAVGNLETILFGKAFQLKL 268
           SS L++ + S M + KP  +L P  ++   Y   L  +   TA   LE +     F+L L
Sbjct: 113 SSALSISLISLMCVPKPLWLLWPGLLMQSSYTLGLSVLTMATAPKILEALGGVIDFELAL 172

Query: 269 PEVVLSMGISL 301
              V SMG ++
Sbjct: 173 IFTVYSMGFAM 183


>Z70212-8|CAB54284.1|  320|Caenorhabditis elegans Hypothetical
           protein R04D3.12 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 117 ENIKRVNIDDSTKDVALFTAILPYFIWSNLCQLV 16
           E ++ VNID +   + L  AIL Y  W N   LV
Sbjct: 164 EELRVVNIDGNNSRMYLIFAILNYSHWPNTSNLV 197


>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
            potassium channelsprotein 11, isoform c protein.
          Length = 1375

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -2

Query: 123  IPENIKRVNIDDSTKDVALFTAILPYFIWSNLCQLVFLLSF 1
            + EN++  N  D  K+ +     +P F+ ++ CQ V ++SF
Sbjct: 1031 VEENLQTQNTHDGIKEQSAVDEEMPLFLKNSDCQTVEVISF 1071


>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
            potassium channelsprotein 11, isoform a protein.
          Length = 1544

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -2

Query: 123  IPENIKRVNIDDSTKDVALFTAILPYFIWSNLCQLVFLLSF 1
            + EN++  N  D  K+ +     +P F+ ++ CQ V ++SF
Sbjct: 1031 VEENLQTQNTHDGIKEQSAVDEEMPLFLKNSDCQTVEVISF 1071


>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
            potassium channelsprotein 11, isoform b protein.
          Length = 1720

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -2

Query: 123  IPENIKRVNIDDSTKDVALFTAILPYFIWSNLCQLVFLLSF 1
            + EN++  N  D  K+ +     +P F+ ++ CQ V ++SF
Sbjct: 1031 VEENLQTQNTHDGIKEQSAVDEEMPLFLKNSDCQTVEVISF 1071


>AF016449-2|AAG24006.1|  333|Caenorhabditis elegans Seven tm
           receptor protein 244 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +2

Query: 32  LLQIKYGKMAVNSATSFVLSSILTLLIFSGMQMYKPQLILSPMTIIFGGYLGSLMFMFFV 211
           + +I Y  + + +A  F     + ++I S  +M  PQ    P T IF    G  + +F +
Sbjct: 49  IFEIIYSVLDILAAPDFFSHDSIFIVITSSERMLVPQFFQVPFTNIFCSMFGVSLVIFVI 108


>U28734-3|AAR25654.1|  495|Caenorhabditis elegans K (potassium)
           voltage-gated sensorychannel subunit protein 1, isoform
           b protein.
          Length = 495

 Score = 24.2 bits (50), Expect(2) = 5.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 184 WFINVHVLCNCCW 222
           W IN  ++ NCCW
Sbjct: 167 WKINDGLMSNCCW 179



 Score = 21.8 bits (44), Expect(2) = 5.2
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 286 DGNIIDCCWHG 318
           DG + +CCW G
Sbjct: 171 DGLMSNCCWRG 181


>U28734-2|AAB52604.3|  490|Caenorhabditis elegans K (potassium)
           voltage-gated sensorychannel subunit protein 1, isoform
           a protein.
          Length = 490

 Score = 24.2 bits (50), Expect(2) = 5.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 184 WFINVHVLCNCCW 222
           W IN  ++ NCCW
Sbjct: 162 WKINDGLMSNCCW 174



 Score = 21.8 bits (44), Expect(2) = 5.2
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 286 DGNIIDCCWHG 318
           DG + +CCW G
Sbjct: 166 DGLMSNCCWRG 176


>U28734-4|AAR30209.1|  477|Caenorhabditis elegans K (potassium)
           voltage-gated sensorychannel subunit protein 1, isoform
           c protein.
          Length = 477

 Score = 24.2 bits (50), Expect(2) = 5.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 184 WFINVHVLCNCCW 222
           W IN  ++ NCCW
Sbjct: 162 WKINDGLMSNCCW 174



 Score = 21.8 bits (44), Expect(2) = 5.2
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 286 DGNIIDCCWHG 318
           DG + +CCW G
Sbjct: 166 DGLMSNCCWRG 176


>Z92812-4|CAB07278.1|  313|Caenorhabditis elegans Hypothetical
           protein T03E6.4 protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 314 MVHRICFTTCLIFCVITIYY 373
           M+  +CFTT ++FC I IYY
Sbjct: 206 MIIVVCFTT-ILFCSINIYY 224


>Z92812-1|CAB07276.1|  334|Caenorhabditis elegans Hypothetical
           protein T03E6.1 protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 314 MVHRICFTTCLIFCVITIYY 373
           M+  +CFTT ++FC I IYY
Sbjct: 206 MIIVVCFTT-ILFCSINIYY 224


>AC024849-4|AAL27260.2|  152|Caenorhabditis elegans Hypothetical
           protein Y67D8B.5 protein.
          Length = 152

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 326 ICFTTCLIFCVITIYYMNK 382
           ICF +CLI+ ++++ Y+ K
Sbjct: 8   ICFVSCLIWFIVSLMYIKK 26


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,941,850
Number of Sequences: 27780
Number of extensions: 247192
Number of successful extensions: 648
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)