Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11n16
         (514 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77350.1 68414.m09008 expressed protein                             75   4e-14
At2g32450.1 68415.m03964 calcium-binding EF hand family protein ...    28   3.2  
At2g03240.1 68415.m00277 EXS family protein / ERD1/XPR1/SYG1 fam...    28   3.2  
At1g77990.1 68414.m09088 sulfate transporter identical to sulfat...    28   3.2  
At4g03440.1 68417.m00471 ankyrin repeat family protein contains ...    27   5.6  
At1g69450.1 68414.m07980 early-responsive to dehydration protein...    27   5.6  
At4g24020.1 68417.m03452 RWP-RK domain-containing protein simila...    27   7.4  
At5g54820.1 68418.m06828 F-box family protein contains Pfam:PF00...    27   9.8  
At4g14820.1 68417.m02279 pentatricopeptide (PPR) repeat-containi...    27   9.8  
At4g09640.1 68417.m01584 expressed protein several hypothetical ...    27   9.8  

>At1g77350.1 68414.m09008 expressed protein
          Length = 122

 Score = 74.5 bits (175), Expect = 4e-14
 Identities = 41/111 (36%), Positives = 64/111 (57%)
 Frame = +2

Query: 56  MAVNSATSFVLSSILTLLIFSGMQMYKPQLILSPMTIIFGGYLGSLMFMFFVTAVGNLET 235
           MA    TS + S I+  +I S  ++Y+ +L  S +  I GG+  SL+F+F +T +GN + 
Sbjct: 1   MAGAVGTSMLGSLIVFTVILSLQEIYRGKLASSELFTILGGFTSSLLFLFSLTFIGNFQE 60

Query: 236 ILFGKAFQLKLPEVVLSMGISLIAAGMVHRICFTTCLIFCVITIYYMNKLS 388
                  +     V+L+  I+LIAAG VHR+C TTC +F    +Y +NK+S
Sbjct: 61  ---SSGIKSGWGAVILAEIIALIAAGTVHRVCITTCFLFSAGLLYEVNKIS 108


>At2g32450.1 68415.m03964 calcium-binding EF hand family protein low
           similarity to O-linked GlcNAc transferase [Homo sapiens]
           GI:2266994; contains Pfam profiles PF00036: EF hand,
           PF00515: TPR Domain
          Length = 802

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +2

Query: 245 GKAFQLKLPEVVLSMGISLIAAGMVHRIC--FTTCLIFCVITIYYMNKLSQKKYAVVAPQ 418
           G  +   LP++ +++GISL   GMV   C  +    I C  T Y   KL       V   
Sbjct: 297 GNQWAYLLPQIYVNLGISLEGEGMVLSACEYYREAAILCP-THYRALKLLGSALFGVGEY 355

Query: 419 PAAVKS 436
            AAVK+
Sbjct: 356 RAAVKA 361


>At2g03240.1 68415.m00277 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 823

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 156 GDSISCGLYICIPENIKRVNIDDSTKDVALFTAILPYFIWSNLCQLVFLLSF 1
           G SI     +CI  N+  + +D  TKD    T +LP F+ + +  +V +L F
Sbjct: 511 GLSIGVFALLCILANLD-MEVDPETKDYQALTELLPLFLLTGMF-VVLVLPF 560


>At1g77990.1 68414.m09088 sulfate transporter identical to sulfate
           transporter [Arabidopsis thaliana] GI:1498120
          Length = 658

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -2

Query: 129 ICIPENIKRVNIDDSTKDVALFTAILPYFIWSNL 28
           +CIP++I   N+     +  L+T+++P  I+S +
Sbjct: 101 LCIPQSIGYANLAGLDPEYGLYTSVVPPLIYSTM 134


>At4g03440.1 68417.m00471 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 751

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = +2

Query: 14  NTSWHKLLQIKYGKMAVNSATSFVLSSILTLLIFSGMQMYKPQLILSPMTIIFGGYLGSL 193
           NT    L+  +Y    + + T  +L+S+L ++     Q+  P+L      +       +L
Sbjct: 585 NTGMAILVDDRYLTTFIMNDTIAMLTSVLAIVALIWAQLGDPELAHRAFHLALPALFVAL 644

Query: 194 MFMFFVTAVGNLETI 238
           +FM F    G L TI
Sbjct: 645 LFMCFTFFYGVLATI 659


>At1g69450.1 68414.m07980 early-responsive to dehydration
           protein-related / ERD protein-related low similarity to
           ERD4 protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 646

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 53  KMAVNSATSFVLSSILTLLIFSGMQMYKPQLILSPMTI 166
           K A N    F + ++    +FSG   YK  +IL P  I
Sbjct: 372 KSACNKVIWFTIWNVFFATVFSGSAFYKLSVILDPKQI 409


>At4g24020.1 68417.m03452 RWP-RK domain-containing protein similar
           to nodule inception protein [Lotus japonicus]
           GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
          Length = 959

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 188 SLMFMFFVTAVGNLETILFGKAFQLKLPE 274
           SL +MF V +  ++E  L G+ F+ KLPE
Sbjct: 205 SLTYMFSVDSESDVELGLPGRVFRQKLPE 233


>At5g54820.1 68418.m06828 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 472

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 235 CLEVTNSSYKEHEH**TKIASEYYSHRRQYKLWF 134
           CLE TN S+KE ++    I    YS    Y+ +F
Sbjct: 43  CLETTNLSFKESDYVNPDITDAEYSRIVAYRSFF 76


>At4g14820.1 68417.m02279 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 722

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +1

Query: 73  HVLRTVVNINPFDIFWNANV*TTAYTVSYDYNI 171
           H+LRTV+N       +N +V +++  +SY  N+
Sbjct: 34  HILRTVINHKLNSFLFNLSVSSSSINLSYALNV 66


>At4g09640.1 68417.m01584 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 386

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +2

Query: 332 FTTCLIFCVIT-IYYMNK-LSQKKYAVVAP 415
           FT  ++FCVIT + Y+NK L     AVV+P
Sbjct: 229 FTVIVLFCVITQMNYLNKALDTFNTAVVSP 258


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,945,205
Number of Sequences: 28952
Number of extensions: 218878
Number of successful extensions: 532
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)