Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov11n14
         (587 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...   197   4e-51
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...   195   2e-50
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr...    31   0.57 
At2g43680.2 68415.m05430 calmodulin-binding family protein simil...    30   1.00 
At2g43680.1 68415.m05429 calmodulin-binding family protein simil...    30   1.00 
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy...    29   1.7  
At4g39480.1 68417.m05585 cytochrome P450 family protein contains...    28   4.0  
At4g12470.1 68417.m01972 protease inhibitor/seed storage/lipid t...    28   5.3  
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g...    27   7.0  
At5g05340.1 68418.m00575 peroxidase, putative similar to peroxid...    27   9.3  
At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator (P...    27   9.3  
At4g04920.1 68417.m00715 expressed protein                             27   9.3  
At3g05650.1 68416.m00629 disease resistance family protein conta...    27   9.3  
At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to...    27   9.3  
At1g76010.1 68414.m08825 expressed protein                             27   9.3  
At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH) domain...    27   9.3  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score =  197 bits (481), Expect = 4e-51
 Identities = 94/168 (55%), Positives = 112/168 (66%), Gaps = 2/168 (1%)
 Frame = +3

Query: 90  MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 263
           M+ + ARPLV++ +   +  T Q +   LP V  AP+RPD+VN VH  +S NSRQPY VS
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60

Query: 264 KEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXX 443
           K+AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH   
Sbjct: 61  KKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRV 120

Query: 444 XXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINK 587
                                  ARGH IE +PE+PLVV+D  + + K
Sbjct: 121 NVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEK 168


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score =  195 bits (476), Expect = 2e-50
 Identities = 94/165 (56%), Positives = 108/165 (65%), Gaps = 2/165 (1%)
 Frame = +3

Query: 99  SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 272
           + ARPLV+V     +  T Q     LP V  AP+RPD+VN VH  +S NSRQPY VSK+A
Sbjct: 5   AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64

Query: 273 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXX 452
           GHQTSAESWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRGGRMFAPTK WRRWH      
Sbjct: 65  GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRVNVN 124

Query: 453 XXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVQEINK 587
                               ARGH IE +PE+PLVV+D  + + K
Sbjct: 125 MKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEK 169


>At5g17650.1 68418.m02069 glycine/proline-rich protein
           glycine/proline-rich protein GPRP - Arabidopsis
           thaliana, EMBL:X84315
          Length = 173

 Score = 31.1 bits (67), Expect = 0.57
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 393 HHDTCYRRHPDRTYGYHHHGHAEF 322
           HH   Y  H    YGY +HGH +F
Sbjct: 122 HHHGHYGHHHGHGYGYGYHGHGKF 145


>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 669

 Score = 30.3 bits (65), Expect = 1.00
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +2

Query: 389 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCCYWRPSARSG*RTHY*KDSRASLGCSRQ 568
           WW +V     LA+ APS   P  +  L  SR C   P ++S  + H   D+       R 
Sbjct: 465 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLCP-SPLSQSSKQHHIRLDNHFDTSTPRS 523

Query: 569 S 571
           S
Sbjct: 524 S 524


>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
           to SF16 protein [Helianthus annuus] GI:560150; contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 668

 Score = 30.3 bits (65), Expect = 1.00
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = +2

Query: 389 WWTYVRPHEALAALAPSRQPPTAESGLGSSRCCYWRPSARSG*RTHY*KDSRASLGCSRQ 568
           WW +V     LA+ APS   P  +  L  SR C   P ++S  + H   D+       R 
Sbjct: 464 WWNWVDRQNPLASPAPSYSQPQRDFRLTPSRLCP-SPLSQSSKQHHIRLDNHFDTSTPRS 522

Query: 569 S 571
           S
Sbjct: 523 S 523


>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 497

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +3

Query: 114 LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 260
           LV +++  SE+++    PLPF  K+P +PD++   H  +  NS+   C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397


>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 989

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 165 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 260
           P+PF  K+P +PD++   H  +  NSR  +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414



 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 165 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 260
           P+PF  K+P +PD++   H  +  NS+  +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887


>At4g12470.1 68417.m01972 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to pEARLI
           1 (Accession No. L43080): an Arabidopsis member of a
           conserved gene family (PGF95-099), Plant Physiol. 109
           (4), 1497 (1995); contains Pfam protease inhibitor/seed
           storage/LTP family domain PF00234
          Length = 161

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -1

Query: 548 KLGNLFNNVSSSLNERWDASSSNGCCQGRSPLSEVDATVPAPPGLR 411
           KLG   N +SS LN +    SS  CC     L +VDA +     LR
Sbjct: 84  KLGVCANVLSSLLNIQLGQPSSQQCCSLIQGLVDVDAAICLCTALR 129


>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
           glycine-rich protein 18 (GRP18) PMID:11431566;
          Length = 228

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = +3

Query: 258 VSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQ---GAFGNMCRGGRMFAPTKPW 422
           + +  G + +AE   + + + ++P   G G    G+   G FGN   GG  F     W
Sbjct: 81  IRRRMGAKPTAEGTSSAQPLLKLPVYGGYGGFWGGKKFSGTFGNKPGGGNPFGDISKW 138


>At5g05340.1 68418.m00575 peroxidase, putative similar to peroxidase
           [Nicotiana tabacum] gi|5381253|dbj|BAA82306; similar to
           Peroxidase P7 [Brassica rapa (Turnip)] SWISS-PROT:P00434
          Length = 324

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 89  NESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSGPGQ*CSRF 226
           N +I +PT S+          G S    V + GAHT G  + C+ F
Sbjct: 163 NSNIPAPTSSLSQLISSFSAVGLSTRDMVALSGAHTIGQSR-CTNF 207


>At4g08960.1 68417.m01476 phosphotyrosyl phosphatase activator
           (PTPA) family protein similar to Protein phosphatase 2A,
           regulatory subunit B' (PP2A, subunit B', PR53 isoform)
           (Phosphotyrosyl phosphatase activator) (PTPA)
           (Swiss-Prot:Q28717) [Oryctolagus cuniculus]
          Length = 392

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 376 PKAP*PDLWVPPPRTRGIRATARPVPHDSALV 281
           P A  P++  PPP  R IRA A  +PH+S  +
Sbjct: 46  PLASFPEM-SPPPNYRPIRAPAINLPHNSQAI 76


>At4g04920.1 68417.m00715 expressed protein 
          Length = 1250

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +3

Query: 183 KAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAE-SWGTGRAVARIPRVRGG 344
           K P   D  + + +S S  S     VS EA  Q++A  +WG+G         RGG
Sbjct: 403 KKPSDQDSSDAISLSCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGG 457


>At3g05650.1 68416.m00629 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-4A protein
           [Lycopersicon esculentum] gi|3097197|emb|CAA73187
          Length = 868

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 449 PTAESGLGSSRCCYW 493
           PT ES   +S CCYW
Sbjct: 66  PTTESWANNSDCCYW 80


>At2g05520.1 68415.m00584 glycine-rich protein (GRP) identical to
           glycine-rich protein; atGRP (GI:259447) [Arabidopsis
           thaliana]
          Length = 145

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 300 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG 395
           G GR      R +GGG  + G G+ G+ CR G
Sbjct: 88  GGGRYQGGGGRYQGGGGRQGGGGSGGSYCRHG 119


>At1g76010.1 68414.m08825 expressed protein
          Length = 350

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 17/44 (38%), Positives = 19/44 (43%)
 Frame = +3

Query: 261 SKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG 392
           S+  G     +  G GR   R  R RGGG  R G G F N   G
Sbjct: 302 SQGRGGYDGPQGRGRGRGRGRGGRGRGGG--RGGDGGFNNRSDG 343


>At1g03050.1 68414.m00277 epsin N-terminal homology (ENTH)
           domain-containing protein / clathrin assembly
           protein-related contains Pfam PF01417: ENTH domain. ENTH
           (Epsin N-terminal homology) domain; similar to CLATHRIN
           COAT ASSEMBLY PROTEIN AP180 - Mus musculus,
           SWISSPROT:Q61548
          Length = 599

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 153 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKY 55
           PAPS ++ N   +   +P+D F    E  PP Y
Sbjct: 519 PAPSTANGNAGNINSPVPMDPFAASLEVAPPAY 551


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,087,429
Number of Sequences: 28952
Number of extensions: 276987
Number of successful extensions: 1011
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)